View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4009_low_9 (Length: 232)
Name: NF4009_low_9
Description: NF4009
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4009_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 1 - 174
Target Start/End: Original strand, 50763631 - 50763804
Alignment:
| Q |
1 |
tgagatagcttctcctattttacatattgcttttagaaaaagtactctacaactttaataagggttaggaacttcatatagaatggaacatttgagcagg |
100 |
Q |
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| T |
50763631 |
tgagatagcttctcctattttacatattgcttttagaaaaagtactctacaactttaataagggttaggaacttcatatagaatggaacatttgagcagg |
50763730 |
T |
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| Q |
101 |
acattccaaaacagaataaatacctgcatgaaaaatgtgagatatatgcaccttaagaattcagaacaattcgt |
174 |
Q |
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| T |
50763731 |
acattccaaaacagaataaatacctgcatgaaaaatgtgagatatatgcaccttaagaattcagaacaattcgt |
50763804 |
T |
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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 47954646 - 47954719
Alignment:
| Q |
1 |
tgagatagcttctcctattttacatattgcttttagaaaaagtactctacaactttaa-taagggttaggaact |
73 |
Q |
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| T |
47954646 |
tgagatagcttctcctattttccatattgcttttagaaaaagtactctacaactttaattaaaggttaggaact |
47954719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 5809044 - 5808997
Alignment:
| Q |
1 |
tgagatagcttctcctattttacatattgcttttagaaaaagtactct |
48 |
Q |
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| T |
5809044 |
tgagatagcttctcctaatttccatattgcttttagaaaaagtactct |
5808997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 5808246 - 5808183
Alignment:
| Q |
41 |
agtactctacaactttaat-aagggttaggaacttcatatagaatggaacatttgagcaggaca |
103 |
Q |
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| T |
5808246 |
agtactctacaattttaattaaaggttaggaactgcatgtagaatggaacaattgagcaggaca |
5808183 |
T |
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