View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_11 (Length: 309)
Name: NF4010_high_11
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 291
Target Start/End: Original strand, 15843286 - 15843576
Alignment:
| Q |
1 |
tcatcttattagttctgaagattttatcatgaagaactagtaaagctaatttaataggatggatcaaattatttcctgccagtacatcaactgtatcggt |
100 |
Q |
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| T |
15843286 |
tcatcttattacttctgaagattttatcatgaagaactagtaaagcttatttaataggatggatcaaattatttcctgccagttcatcaactgtatcggt |
15843385 |
T |
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| Q |
101 |
cgaaccgatccattttggacctcttctccctttctctctaacgtagagcaaaatagctacaaacattacaattgtatatgcaagcatacacatgttctgt |
200 |
Q |
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| T |
15843386 |
cgaaccgatccattttggacctcttctccctttctctctaacgtagagcaaaatagctacaaacattacaattgtacatgcaagcatacacatgttctgt |
15843485 |
T |
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| Q |
201 |
aaaacacataaataaaaacatgtttgttctttgcctttctctttttagtttttaccataaacgcattttattaagaaagattgatctattt |
291 |
Q |
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| T |
15843486 |
aaaacacataaataaaaacatgtttgttctttgcctttctctttttagtttttaccataaacgcattttattaagaaagattgatctattt |
15843576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 8 - 291
Target Start/End: Original strand, 15828720 - 15829010
Alignment:
| Q |
8 |
attagttctgaagattttatcatgaagaactagtaaagctaatttaataggatggatcaaattatttcctgccagtacatcaactgtatcggtcgaaccg |
107 |
Q |
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| T |
15828720 |
attagttctgaagattttatcacgaagaactagcaa-gcttatttaataggatggatcaaattatatcatatcagtacattaactgtataggtcga-cca |
15828817 |
T |
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| Q |
108 |
atccattttggacctcttctccctttctctctaacgtagagcaaaa-tagctacaaacattacaattgtatatgcaagcatacacatgttctgtaaaaca |
206 |
Q |
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||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
15828818 |
atccattttggacctcttctccctttctctctaacctagagaaaaaatagctacaaacattacaaatgtatatgcaagcatacacatgttctgcaaaaca |
15828917 |
T |
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| Q |
207 |
cat--aaataaaaacatgtttg---ttctttgcctttctctttttagtttttaccat---aaacgcattttattaagaaagattgatctattt |
291 |
Q |
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||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
15828918 |
cataaaaataaaaacatgtttgttcttctttgcctttctctttttagtttttaccattccaaacgcattttattaagaaagattgatctattt |
15829010 |
T |
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