View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_13 (Length: 299)
Name: NF4010_high_13
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_13 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 299
Target Start/End: Original strand, 15842895 - 15843183
Alignment:
| Q |
11 |
cataggtaaggatggaagcataagaagaccaaataaaattaatttcagtctaccatttgacatacctagtgaaacttctccggcaacagccatctgttga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15842895 |
cataagtaaggatggaagcataagaagaccaaataaaattaatttcagtctaccatttgacatacctagtgaaacttctccggcaacagccatctgttga |
15842994 |
T |
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| Q |
111 |
aaatttcgactaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctca |
210 |
Q |
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| T |
15842995 |
aaatttcgactaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctca |
15843094 |
T |
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| Q |
211 |
agaaccagaaatacaagaagatcatgcagaccacatactataaatcacattatatatgcatagaaatcgggacataacattctttaacc |
299 |
Q |
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| T |
15843095 |
agaaccagaaatacaagaagatcatgcagaccacatactataaatcacattatatatgcatagaaatcgggacataacattctttaacc |
15843183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 11 - 286
Target Start/End: Original strand, 15828278 - 15828555
Alignment:
| Q |
11 |
cataggtaaggatggaagcataagaagaccaaataaaattaatttcagtctaccatttgacatacctagtgaaacttctccggcaacagccatctgttga |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15828278 |
cataggtaaggatggaagcataagaagaccaaataaaattaatttcagtttaccatttgacatacctagtgaaacttctccggcaacagccatctgttga |
15828377 |
T |
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| Q |
111 |
aaatttcgactaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctca |
210 |
Q |
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| T |
15828378 |
aaatttcgattaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctca |
15828477 |
T |
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| Q |
211 |
agaaccagaaatac--aagaagatcatgcagaccacatactataaatcacattatatatgcatagaaatcgggacata |
286 |
Q |
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| T |
15828478 |
agaaccagaaacacaaaagaagatcatgcagaccacatactataaatcacattatatatgcatagaaatcaggacata |
15828555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 19 - 276
Target Start/End: Complemental strand, 47446716 - 47446459
Alignment:
| Q |
19 |
aggatggaagcataagaagaccaaataaaattaatttcagtctaccatttgacatacctagtgaaacttctccggcaacagccatctgttgaaaatttcg |
118 |
Q |
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| T |
47446716 |
aggatggaagcataagaagaccagataaaattaatttcaat-tacagtctgacaaacctagtgaaacttctccggcaacagccatctgttgaaaattttg |
47446618 |
T |
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| Q |
119 |
actaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctcaagaaccag |
218 |
Q |
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| T |
47446617 |
actaaaggtttcatttatctgggccacaaggtttctcaatgtagggagccattttccctgcagaaaaaacttaaagatttgagcttatttccacaaccgg |
47446518 |
T |
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| Q |
219 |
aaatac-aagaagatcatgcagaccacatactataaatcacattatatatgcatagaaa |
276 |
Q |
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| T |
47446517 |
aaacacaaaaaaggtcatgcagctcaggcactataaatcacattatctatgcatggaaa |
47446459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 10705802 - 10705597
Alignment:
| Q |
19 |
aggatggaagcataagaagaccaaataaaattaatttcagtctaccatttgacatacctagtgaaacttctccggcaacagccatctgttgaaaatttcg |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||| | ||| | || || |||||||||||||||||| |||||||||||||||||||||||| | |
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| T |
10705802 |
aggatggaagcataagaa-accaaataaaattaatttcaat-tacagtctgccaaacctagtgaaacttctccagcaacagccatctgttgaaaattttg |
10705705 |
T |
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| Q |
119 |
actaaaagtttcatttatctgagccacaagatttctgagagttggaagccacttttcctgcagaagaacttaaaatatttgagcttttctcaagaaccag |
218 |
Q |
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||||||||||||||||||||| ||||| || ||||| | || || ||||| ||| ||||||||| || ||| |||||||||||| || | |||||| |
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| T |
10705704 |
actaaaagtttcatttatctgggccacgaggtttctcaatgtagggagccattttccctgcagaaaaaacacaaagatttgagcttttttccacaaccag |
10705605 |
T |
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| Q |
219 |
aaatacaa |
226 |
Q |
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||| |||| |
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| T |
10705604 |
aaacacaa |
10705597 |
T |
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