View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_14 (Length: 275)
Name: NF4010_high_14
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 9658519 - 9658276
Alignment:
| Q |
18 |
acatgctggaccagctttacctctttcatttatggttgctggaatagcagcagcactttcagctctttgttatgctgagttagccagtcgttttccttct |
117 |
Q |
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| T |
9658519 |
acatgctggaccagctttaccactttcattcatggttgctggtatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttct |
9658420 |
T |
|
| Q |
118 |
gctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtatatattcaccttattgacattcttaatttcttacattacataaattaga |
217 |
Q |
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||||||||||||||||| |||||||| ||||||||||||||||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||| |
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| T |
9658419 |
gctggaagtgcttatcattatgcttatatatgtcttggtgaagggtatttatacattcaccttctttacattcttaatttcttacattacataaattaga |
9658320 |
T |
|
| Q |
218 |
atctatattgttttagacggtctgatctggatcggatgagtacc |
261 |
Q |
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| T |
9658319 |
atctatattgttttagacggtctgatctggatcagatgagtacc |
9658276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 9641620 - 9641428
Alignment:
| Q |
18 |
acatgctggaccagctttacctctttcatttatggttgctggaatagcagcagcactttcagctctttgttatgctgagttagccagtcgttttccttct |
117 |
Q |
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||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
9641620 |
acatgctggaccagctttaccattttcattcatggttgctggtatagcagcagctctttcagctctttgttatgctgagttggctagtcgttttccttct |
9641521 |
T |
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| Q |
118 |
gctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtatatattcaccttattgacattcttaatttcttacattacata |
210 |
Q |
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| T |
9641520 |
gctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatttatacattcaccttctttacattcttaaattcttacattacata |
9641428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 9618369 - 9618207
Alignment:
| Q |
18 |
acatgctggaccagctttacctctttcatttatggttgctggaatagcagcagcactttcagctctttgttatgctgagttagccagtcgttttccttct |
117 |
Q |
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||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9618369 |
acatgctggaccagcattaccactttcattcatggtagctggaatagcagcagctctttcagctctttgttatgctgagttggccagtcgttttccttct |
9618270 |
T |
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| Q |
118 |
gctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtatatattcacctt |
180 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
9618269 |
gctggaagtgcttatcattatgcttacatatgtcttggtgaagggtatttatacattcacctt |
9618207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 9633095 - 9632920
Alignment:
| Q |
18 |
acatgctggaccagctttacctctttcatttatggttgctggaatagcagcagcactttcagctctttgttatgctgagttagccagtcgttttccttct |
117 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||||| ||||||||||| || ||||||||||||||| |
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| T |
9633095 |
acatgctggaccagctttaccactttcattcatggttgctggtatagcagctgctatttcagctctttgctatgctgagttggctagtcgttttccttct |
9632996 |
T |
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| Q |
118 |
gctggaagtgcttatcactatgcttacatatgtcttggtgaagggtatgtatatattcaccttattgacattctta |
193 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||| |||| || | ||||||| |
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| T |
9632995 |
gctggaagtgcttatcattatgcttacatatgtcttggtgaagggtatttatacattctccttctttagattctta |
9632920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 164
Target Start/End: Original strand, 33641628 - 33641769
Alignment:
| Q |
23 |
ctggaccagctttacctctttcatttatggttgctggaatagcagcagcactttcagctctttgttatgctgagttagccagtcgttttccttctgctgg |
122 |
Q |
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||||||| ||||| || |||| ||| || ||||||| ||||||| | |||||||| |||||||||| |||||||| || | | ||||||||||| |
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| T |
33641628 |
ctggaccggctttggctatttcttttctgattgctgggttagcagctggtctttcagccttttgttatgcagagttagcttgtagatgcccttctgctgg |
33641727 |
T |
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| Q |
123 |
aagtgcttatcactatgcttacatatgtcttggtgaagggta |
164 |
Q |
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||||| ||||||||| | |||||||||||||| |||||||| |
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| T |
33641728 |
gagtgcatatcactattcatacatatgtcttggagaagggta |
33641769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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