View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_19 (Length: 243)
Name: NF4010_high_19
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_19 |
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Alignment Details
Target: chr2 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43526803 - 43527020
Alignment:
| Q |
1 |
aaagggtcaataagttgacccggccggtttaatataacatccggttcgccgatttaatccggatcttgccggattaaactggtccataacgggttgataa |
100 |
Q |
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| T |
43526803 |
aaagggtcaataagatgagtcggccggtttaatataacatccggttcgccgatttaatccggatcttgccggattaaactggtccataacgggttgataa |
43526902 |
T |
|
| Q |
101 |
cataaccgatctgatcactaaatggaaccggttaaccatccggtttccgattggactggttcgaccggctgatcaggtttttaaaaatatgcttcgagac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||| |||| |
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| T |
43526903 |
cataaccgatctgatcactaaatggaaccggttaaccatccggttcccgattggact---------ggctgatccggtttttaaaaatatgcttcaagac |
43526993 |
T |
|
| Q |
201 |
tccatctattgtcttaattacttcatg |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43526994 |
tccatctattgtcttaattacttcatg |
43527020 |
T |
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