View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_2 (Length: 707)
Name: NF4010_high_2
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 559; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 559; E-Value: 0
Query Start/End: Original strand, 20 - 702
Target Start/End: Complemental strand, 38301719 - 38301027
Alignment:
| Q |
20 |
aacccttagttgcttcaaccatgaatctgccacactcaatagtgacattagtctttcttggtcccgaccacgatttcctccaatccacacattcccttct |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
38301719 |
aacccttagttgcttcaaccatgaatctgccacactcaatagtgacattagtctttcttggtcccgaccacgatttcctccaatccacacattccctcct |
38301620 |
T |
|
| Q |
120 |
tgcatcttgtatgttgccaatccaaatgctggcaaagagatgctttccccttcctttttcttctctttcccaccctcaatatcatcatcaaggtccatcc |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301619 |
tgcatcttgtatgttgccaatccaaatgctggcaaagagatgctttccccttcctttttcttctctttcccaccctcaatatcatcatcaaggtccatcc |
38301520 |
T |
|
| Q |
220 |
ctatacataatcaaacacctttctttaattagtatgggaaaaattaaataagcataggagtagttaatgtgacacacttgatgcataactaggtccgagt |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38301519 |
ctatacataatcaaacacctttctttaattagtatgggaaaaattaaataatcgtaggagtagttaatgtgacacacttgatgcataactaggtccgagt |
38301420 |
T |
|
| Q |
320 |
taggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaactcaaataaattgttaannnnnnngtttgaatattttcgtcttcaatt |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||| |
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| T |
38301419 |
taggtttctctcacctcacatgactaaaaatatacaataatagacggaaaaactcaaacaaattgttactttttttgtttgaatctttctgtcttcaatt |
38301320 |
T |
|
| Q |
420 |
ggaattttttcgaacatgatctcaactcatttgatacagcttaaataacttaattataatcgttatatttaatctaatgattaatatatcgctagaaaga |
519 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||| | |||||||||| |
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| T |
38301319 |
ggaattttttcaaacatgatctcaactcatttgatacagcttaaacaacttaattgtaatcgttatatttaatctaatgatcaatatttggctagaaaga |
38301220 |
T |
|
| Q |
520 |
tatggtacaaaagaatccgagttcaataatactaatataggataaaactagcatcta-----------atgtctatgttttaataaaaatatcatgaaag |
608 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38301219 |
catggtac-aaagaatccgagttcaataatactaatataggataaaactagcatctaatgtcatagacatgtctatgttttaataaaaatatcatgaaag |
38301121 |
T |
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| Q |
609 |
ttgggatttgattggcaattatgtaaaagtagttatgagtagtttcaatcataatgaaaaagaacatctattgcatctagccacctatgctact |
702 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38301120 |
ttgggatttgattggcaattatgtaaaagtagttatgagtagtttgaatcataatgaaaaagaacatctattgcatctagccacctatggtact |
38301027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 14856901 - 14857057
Alignment:
| Q |
27 |
agttgcttcaaccatgaatctgccacactcaatagtgacattagtctttcttggtcccgaccacgatttcctccaatccacacattcccttcttgcatct |
126 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| | || |||||||||||| ||||| ||||| | ||||| ||||| ||||||||| |
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| T |
14856901 |
agttgcttcaaccatgaatctgccacactacatagtgaaaccagcttttcttggtccctaccacattttccagagacccacaaattcc---cttgcatct |
14856997 |
T |
|
| Q |
127 |
tgtatgttgccaatccaaatgctggcaaagagatgctttccccttcctttttcttctctt |
186 |
Q |
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|||| || || || ||||||| | |||||||||||| ||| || ||||| ||||||||| |
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| T |
14856998 |
tgtacgtggctaaaccaaatggttgcaaagagatgccttcaccatccttcctcttctctt |
14857057 |
T |
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