View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_25 (Length: 218)
Name: NF4010_high_25
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_25 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 13 - 203
Target Start/End: Complemental strand, 11252189 - 11251999
Alignment:
| Q |
13 |
cataggtccaagcgattgttcccgattcatcatagatgttacaaaaattatctatagtgtatccctcatgcatcaacttaattgtaatctttttaagtct |
112 |
Q |
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| T |
11252189 |
cataggtacaagcgattgttcccgattcatcatagatgttacaaaaattctctatagtgtatccctcatgcatcaacttaattgtaatctttttaagtct |
11252090 |
T |
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| Q |
113 |
gcgtacacttgaatattcctaaaacctctactccaagcattagcaatcttcaatcaatgtaaatttcccccaaagttaacttctaaaatat |
203 |
Q |
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| T |
11252089 |
gcgtacacttgaatattcctaaaacctctactccaagcattagcaatcttcaatcaatgtaaatttcccccaaagttaacttctaaaatat |
11251999 |
T |
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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 27540633 - 27540696
Alignment:
| Q |
86 |
caacttaattgtaatctttttaagtctgcgtacacttgaatattcctaaaacctctactccaagca |
151 |
Q |
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| T |
27540633 |
caacttaattgtaatctatg--agtctgcgtacacttgaatattcctaaaatctctactccaagca |
27540696 |
T |
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