View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_3 (Length: 470)
Name: NF4010_high_3
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 41 - 452
Target Start/End: Original strand, 52068183 - 52068596
Alignment:
| Q |
41 |
ataggtgatctttgtataattttatcaaaagaaaatggattagcgaaaatgaagttaaataaaacctaattttcattgtataattttatcatgaaagtta |
140 |
Q |
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| T |
52068183 |
ataggtgatctttgtataattttatcaaaagaaaatggattagcgaaaatgaagttaaataaaacctaattttcattgtataattttatcatgaaagtta |
52068282 |
T |
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| Q |
141 |
tatggtttccattctgatatgagcccaactgtatgtgcaactattgaattgaacctataaattataattgtaggttaatctaattttaaaattt-tcatt |
239 |
Q |
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| T |
52068283 |
tatggtttccattctgatatgagcccaactgtatgtgcaactattgaattgaacctataaattatatttgtaggttaatctaattttaaaatttattttt |
52068382 |
T |
|
| Q |
240 |
ccattcctatcaagcaatctagtctatacaatcaacttgcttaaatattcccacatgactttcattcc-nnnnnnnnnnnaaggatgactttcattccta |
338 |
Q |
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| T |
52068383 |
ccattcctatcaagcaatctagtgtatacaatcaacttgcttaaatattcccacatgactttcattccttttttttttttaaggatgactttcattccta |
52068482 |
T |
|
| Q |
339 |
tcgagtgcctacaaaaagttagtatatatcaagcaaaaattgaattcccatcaacttctactgacaccaaatattttttagaatatactttggggatgat |
438 |
Q |
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| T |
52068483 |
tcgagtgcctacaaaaagttagtatatatcaagcaaaaattgaattcccatcaacttctactgacaccaaatattttttagaatatactttggggatgat |
52068582 |
T |
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| Q |
439 |
agattgatacgtat |
452 |
Q |
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| T |
52068583 |
agattgatacgtat |
52068596 |
T |
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