View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_high_4 (Length: 465)
Name: NF4010_high_4
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 449
Target Start/End: Complemental strand, 42711174 - 42710752
Alignment:
| Q |
29 |
tggtgcaaccatttttcctataacgcagaagaaatgacattcatcttcttatccatatcaacaagcttgcctagtatttttgaaggtcatccttaattac |
128 |
Q |
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| T |
42711174 |
tggtgcaaccatttttcctataacgcagaagaaatgacattcatcttcttatccatatcaacaagcttgcctagtattttttaaggtcatccttaattac |
42711075 |
T |
|
| Q |
129 |
ctttcttgacgtgatgagacaacaatgtgatatctctttcatttcttctccctactaatgttaggtgccattatacagattgagaaacaacaaaaataac |
228 |
Q |
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| T |
42711074 |
ctttcttgacgtgatgagacaacaatgtgatatctctttcatttcttctccctactaatgttaggtgccattatacagattgagaaacaacaaaaataac |
42710975 |
T |
|
| Q |
229 |
tcaaaaatacttactgaaataattattaaaagatttatgaaagaaatcaaacatctt--nnnnnnnnncatgagatgtctatccacttacagaaaaaacc |
326 |
Q |
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| T |
42710974 |
tcaaaaatacttactgaaataattattaaaagatttatgaaagaaatcaaacatcttaaaaaaaaaaacatgagatgtatatccacttacagaaaaaacc |
42710875 |
T |
|
| Q |
327 |
ttaataagtaaacaaactccattcacgtatcttccnnnnnnnnnnnnnnnnnctcggtcttacagaaaaaagaagctaaaaattagaattagtttaaaaa |
426 |
Q |
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||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42710874 |
ttaataagtaaacaaactccattgacgtatcttcctttttctttacttttttctcggtcttacagaaaaaagaagctaaaaattagaattagtttaaaaa |
42710775 |
T |
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| Q |
427 |
taatgggataatacctgagtttc |
449 |
Q |
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| T |
42710774 |
taatgggataatacctgagtttc |
42710752 |
T |
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