View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4010_high_6 (Length: 352)
Name: NF4010_high_6
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_high_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 130; Significance: 3e-67; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 15310780 - 15310984
Alignment:
| Q |
75 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
15310780 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga |
15310879 |
T |
|
| Q |
175 |
------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15310880 |
atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
15310979 |
T |
|
| Q |
269 |
caaca |
273 |
Q |
| |
|
|||| |
|
|
| T |
15310980 |
aaaca |
15310984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 75 - 273
Target Start/End: Original strand, 15316074 - 15316278
Alignment:
| Q |
75 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagataggaagaatttcacaccgaagtgataaggaatgtagaaatatttttacttactttggga |
174 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||||||||| |||||||||| ||||||| |||||||| |
|
|
| T |
15316074 |
ttgaattcttcctatcctttgtggaaaaaatggtgaaagaaaggaagaatttcaccctgaagtgataaggaaagtagaaatatctttacttgctttggga |
15316173 |
T |
|
| Q |
175 |
------atgtatttgtaacggaggagaagaaatagtgcgaaacnnnnnnnngaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15316174 |
atgtatatgtatttgtaacggaggagaagaaatagtgcgaaacaaaaaaaagaacgatcttaatttatatagacgatttaacatcaaaagccacattgtc |
15316273 |
T |
|
| Q |
269 |
caaca |
273 |
Q |
| |
|
|||| |
|
|
| T |
15316274 |
aaaca |
15316278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15310321 - 15310368
Alignment:
| Q |
13 |
aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa |
59 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15310321 |
aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa |
15310368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 15315615 - 15315662
Alignment:
| Q |
13 |
aatatggaacacaa-ggtaaatggaaaagaatacatcataaagtagaa |
59 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
15315615 |
aatatggaacacaaaggtaaatggaaaagaatatatcataaagtagaa |
15315662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University