View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_10 (Length: 316)
Name: NF4010_low_10
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 149; Significance: 1e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 38905331 - 38905479
Alignment:
| Q |
16 |
gtttgtcaactactttgatttgtatatagatgagtttggcttgtatggaaagctcggaagagggtggagggcattcagagccacctgatcccgatgttct |
115 |
Q |
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| T |
38905331 |
gtttgtcaactactttgatttgtatatagatgagtttggcttgtatggaaagctcggaagagggtggagggcattcagagccacctgatcccgatgttct |
38905430 |
T |
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| Q |
116 |
cgaaattgattctacttctcgttacatcaaggtaatgcaattgcctatg |
164 |
Q |
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| T |
38905431 |
cgaaattgattctacttctcgttacatcaaggtaatgcaattgcctatg |
38905479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 162 - 310
Target Start/End: Original strand, 38905505 - 38905653
Alignment:
| Q |
162 |
atgttaaaataaacaataaccttacaatgcaataagctaattctgctttttgcatctgtaacagtacaaagaagtgatcggcaaaggagccttcaaaact |
261 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38905505 |
atgttaaaataaacaataaccttacaatgcaataagctaattctgctttttgcatctgtaacagtacaaagaagtgatcgggaaaggagccttcaaaact |
38905604 |
T |
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| Q |
262 |
ttgtatccattaatacaatgcatcttgttgttaagaataagaataattt |
310 |
Q |
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| T |
38905605 |
ttgtatccattaatacaatgcatcttgttgttaagaataagaataattt |
38905653 |
T |
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