View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_17 (Length: 267)
Name: NF4010_low_17
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4975424 - 4975164
Alignment:
| Q |
1 |
atgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975424 |
atgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaa |
4975325 |
T |
|
| Q |
101 |
cccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975324 |
cccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaa |
4975225 |
T |
|
| Q |
201 |
atattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctc |
262 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4975224 |
atattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
4975164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 4993332 - 4993072
Alignment:
| Q |
1 |
atgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaa |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993332 |
atgtcttctaacttatgaataaatgtttgatataacttccttaaataaaatattaagcaagcagttgataaatcattaaacccataatctactctttcaa |
4993233 |
T |
|
| Q |
101 |
cccttcggttattctctcttccttttagcattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaa |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993232 |
cccttcggttattctctcttccttttagtattttcttcaataatgcatagttttcaattgtgagattattttttgttagtaacttagtattactcaagaa |
4993133 |
T |
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| Q |
201 |
atattactatattgatttcttttttaaacaacaaattttatttaaccatcaggtctctgctc |
262 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4993132 |
atattactatattgattt-ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
4993072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 220 - 262
Target Start/End: Original strand, 43312275 - 43312317
Alignment:
| Q |
220 |
ttttttaaacaacaaattttatttaaccatcaggtctctgctc |
262 |
Q |
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||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
43312275 |
ttttttaaacaacaaattttatttaaccacctggtctctgctc |
43312317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 220 - 255
Target Start/End: Original strand, 10248185 - 10248220
Alignment:
| Q |
220 |
ttttttaaacaacaaattttatttaaccatcaggtc |
255 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
10248185 |
tttttgaaacaacaaattttatttaaccatcaggtc |
10248220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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