View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_20 (Length: 250)
Name: NF4010_low_20
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_20 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 38 - 250
Target Start/End: Original strand, 44467243 - 44467476
Alignment:
| Q |
38 |
gaagccatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatatt------------tctaatgct |
125 |
Q |
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| T |
44467243 |
gaagacatacaatttattaatatattttttaaaagagtatatagtatagtgttagcatttcatggtttagttaaatattgctcctggcctttctaatgct |
44467342 |
T |
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| Q |
126 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctc---------catcatcatcgttgccttcacacatgcaa |
216 |
Q |
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| T |
44467343 |
cattctattctcttgaagcacaaaaacatgaaaactcttctaaccttaatcttcacattctccatcatcatcatcatcatcgttgccttcacacatgcaa |
44467442 |
T |
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| Q |
217 |
caccaacattgatcattcgcactcaacctcaaat |
250 |
Q |
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| T |
44467443 |
caccaacattgatcattcgcactcaacctcaaat |
44467476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 44467196 - 44467235
Alignment:
| Q |
10 |
gcaaaggtattagtgattacatttccatgaagccatacaa |
49 |
Q |
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| T |
44467196 |
gcaaaggtattagtgattacatttccatgaagccatacaa |
44467235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 153 - 227
Target Start/End: Original strand, 44488783 - 44488851
Alignment:
| Q |
153 |
atgaaaactcttctaaccttaatcttcacattctccatcatcatcgttgccttcacacatgcaacaccaacattg |
227 |
Q |
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| T |
44488783 |
atgaaaactctt---accttaatcttcacattctc---catcattgttgccttctcacatgcagcaccaacattg |
44488851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 168 - 250
Target Start/End: Original strand, 44474457 - 44474536
Alignment:
| Q |
168 |
accttaatcttcacattctccatcatcatcgttgccttcacacatgcaacaccaacattgatcattcgcactcaacctcaaat |
250 |
Q |
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| T |
44474457 |
accttaatcttcacattct---tcatcgttgctgccttcacaaatgcaacaccatcattggtctctcgctctcaacttcaaat |
44474536 |
T |
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