View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_23 (Length: 237)
Name: NF4010_low_23
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_23 |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 2 - 221
Target Start/End: Complemental strand, 42125586 - 42125367
Alignment:
| Q |
2 |
atttgcaaagcttctctcaggaacagaagccttctgcgtatacttacgccttatcggtgccaaaattggtaagcattgttccattagagcaatcaatcca |
101 |
Q |
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| T |
42125586 |
atttgcaaagcttctctcaggaacagaagccttctgcgtatacttacgccttattggtgccaaaattggtaagcattgttccattagagcaatcaatcca |
42125487 |
T |
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| Q |
102 |
gtttcaaaccccgagttaatgtcaattggtgatggtgttcatcttggtgactttagccgcataatcactggtttcaactattctgatggatacacttgtg |
201 |
Q |
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| T |
42125486 |
gtttcaaaccccgagttaatgttaattggtgatggtgttcatcttggtgactttagccgcataatcactggtttcaactattctgatggatacacttgtg |
42125387 |
T |
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| Q |
202 |
gaaaaatagaggttcaagat |
221 |
Q |
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|||||||||||||||||||| |
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| T |
42125386 |
gaaaaatagaggttcaagat |
42125367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 9 - 221
Target Start/End: Complemental strand, 24928875 - 24928663
Alignment:
| Q |
9 |
aagcttctctcaggaacagaagccttctgcgtatacttacgccttatcggtgccaaaattggtaagcattgttccattagagcaatcaatccagtttcaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||| || |||||| | || || |||||||| |||||||| ||||| |||| ||||| |||||||||| |
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| T |
24928875 |
aagcttctctcaggaacagaagccttctgcgtatatttgcgccttttaggcgcaaaaattggcaagcattgctccatccgagccatcaacccagtttcaa |
24928776 |
T |
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| Q |
109 |
accccgagttaatgtcaattggtgatggtgttcatcttggtgactttagccgcataatcactggtttcaactattctgatggatacacttgtggaaaaat |
208 |
Q |
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| T |
24928775 |
atccagagctaatgtcaattggtgccggtgtccatctcggagattttagcaaaataattacaggattccattcttccaatggatatacttccggaaaaat |
24928676 |
T |
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| Q |
209 |
agaggttcaagat |
221 |
Q |
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|||||||||||| |
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| T |
24928675 |
cgaggttcaagat |
24928663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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