View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_25 (Length: 236)
Name: NF4010_low_25
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 18038282 - 18038060
Alignment:
| Q |
1 |
tcttcttctttttggttgaatggcttatattataaaatttatttaatg-aaaactatagaaaacacatcatgcatcttagactttattgaacaggctagc |
99 |
Q |
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| T |
18038282 |
tcttcttcttttttgttgaatggcttatattataaaatttatttaatgtaaaactatagaaaacacatcatgcatcttagactttattaaacagggtagc |
18038183 |
T |
|
| Q |
100 |
tttctttgaattatatttctttcaacaaatctacattacaacatttgctacaatacaattattcnnnnnnncaaacatttgctacattacaaatctacat |
199 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18038182 |
tttctttgagttatatttctttcaacaaatctacattacaacatttgctacaatacaattattcaaaaaaacaaacatttgctacattacaaatctacat |
18038083 |
T |
|
| Q |
200 |
agaccaacaagaatttaatttgt |
222 |
Q |
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||||||||||||||||||||| |
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| T |
18038082 |
tcaccaacaagaatttaatttgt |
18038060 |
T |
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