View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4010_low_27 (Length: 218)

Name: NF4010_low_27

Description: NF4010

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF4010_low_27

[»] chr5 (1 HSPs)

[»] chr4 (1 HSPs)

Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 1)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 183; E-Value: 4e-99

Query Start/End: Original strand, 13 - 203

Target Start/End: Complemental strand, 11252189 - 11251999

Alignment:

Q	13	cataggtccaagcgattgttcccgattcatcatagatgttacaaaaattatctatagtgtatccctcatgcatcaacttaattgtaatctttttaagtct	112	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11252189	cataggtacaagcgattgttcccgattcatcatagatgttacaaaaattctctatagtgtatccctcatgcatcaacttaattgtaatctttttaagtct	11252090	T

Q	113	gcgtacacttgaatattcctaaaacctctactccaagcattagcaatcttcaatcaatgtaaatttcccccaaagttaacttctaaaatat	203	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	11252089	gcgtacacttgaatattcctaaaacctctactccaagcattagcaatcttcaatcaatgtaaatttcccccaaagttaacttctaaaatat	11251999	T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)

Name: chr4

Description:

Target: chr4; HSP #1

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 86 - 151

Target Start/End: Original strand, 27540633 - 27540696

Alignment:

Q	86	caacttaattgtaatctttttaagtctgcgtacacttgaatattcctaaaacctctactccaagca	151	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	27540633	caacttaattgtaatctatg--agtctgcgtacacttgaatattcctaaaatctctactccaagca	27540696	T

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