View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_28 (Length: 216)
Name: NF4010_low_28
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_28 |
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| [»] scaffold0016 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 164; Significance: 8e-88; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 27 - 198
Target Start/End: Original strand, 31033796 - 31033967
Alignment:
| Q |
27 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31033796 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
31033895 |
T |
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| Q |
127 |
tacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgactt |
198 |
Q |
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| T |
31033896 |
tacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtaaagggttagtccacgactt |
31033967 |
T |
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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 35 - 193
Target Start/End: Complemental strand, 31098170 - 31098012
Alignment:
| Q |
35 |
tcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttctacaccag |
134 |
Q |
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|||| |||||||||| ||| ||||||| |||||||||||||||||| || ||||||||||| ||||||||||||| |||||| ||||| | ||||| | |
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| T |
31098170 |
tcaagacattgcattgccttcctcccacttcagaagtaatgattttaactatccctgactacaatgccagcctgagtcagatacgagatatttacacaaa |
31098071 |
T |
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| Q |
135 |
atctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccac |
193 |
Q |
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| T |
31098070 |
acctcccctagtcttctgactcgatgccaagtcctaaacaaactaaaggtttagtccac |
31098012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 27 - 199
Target Start/End: Complemental strand, 31207 - 31035
Alignment:
| Q |
27 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagatatgagatttc |
126 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |
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| T |
31207 |
aaaaaccctcaacacattgcatttcctacctcccatttcagaagtaatgatttttaccatccctgactagaatgccagcctgaagcagaaatgggatttc |
31108 |
T |
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| Q |
127 |
tacaccagatctccccttatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacgacttt |
199 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31107 |
tacaccagatctcccctaatcttctgacttgacgccaactcctaaaaaaggtagagggttagtccacaacttt |
31035 |
T |
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