View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4010_low_3 (Length: 533)

Name: NF4010_low_3
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4010_low_3
NF4010_low_3
[»] chr5 (6 HSPs)
chr5 (70-497)||(33079197-33079625)
chr5 (354-491)||(41518846-41518984)
chr5 (192-290)||(41547382-41547480)
chr5 (83-296)||(41508906-41509119)
chr5 (199-290)||(41519132-41519223)
chr5 (370-431)||(41523729-41523791)


Alignment Details
Target: chr5 (Bit Score: 401; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 70 - 497
Target Start/End: Complemental strand, 33079625 - 33079197
Alignment:
Q  70 atctaggttggtaaattggaggaaacagtgactgagaaattggaaactataagtgatttggagaacaaaaatagaaaattggcggatgaaaagcgcaaag 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079625 atctaggttggtaaattggaggaaacagtgactgagaaattggaaactataagtgatttggagaacaaaaatagaaaattggcggatgaaaagcgcaaag 33079526  T
Q  170 ttgagacctcacttgagtttttgatcacgaagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgagcttagctgc 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  33079525 ttgagacctcacttgagtttttgaacacgaagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgaacttagctgc 33079426  T
Q  270 ctctggtcgaggaaacaatgacggggagcct-ctgctgctgaacctatggtcactaattttgaagatgaagacgaagaggcttcatcagagtctgaagtt 368  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33079425 ctctggtcgaggaaacaatgacggggagcctcctgctgctgaacctatggtcactgattttgaagatgaagacgaagaggcttcatcagagtctgaagtt 33079326  T
Q  369 aaaggttcatcatcaggtattaaaattatgcatacatatcttaattcctataaagatatgcatgttcttaatgctagtttacaaacattgaattcaatat 468  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33079325 aaaggttcatcaccaggtattaaaattatgcatacatatcttaattcctataaagatatgcatgttcttaatgctagtttacaaacattgaattcaatat 33079226  T
Q  469 gtgtgataggaatatgtttggttagatag 497  Q
    |||||||| ||||||||||||||||||||    
T  33079225 gtgtgatatgaatatgtttggttagatag 33079197  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 354 - 491
Target Start/End: Complemental strand, 41518984 - 41518846
Alignment:
Q  354 tcagagtctgaagttaaaggttcatcatcaggtattaaaattatgcatacatatcttaattcctataaagatatgcatgttcttaatgctagtttacaaa 453  Q
    ||||||||||||||||||||| |||||||||||||  ||||||||| ||||| |||||||||||||||||||||||||| ||| ||| ||| ||||  ||    
T  41518984 tcagagtctgaagttaaaggtgcatcatcaggtatataaattatgcttacatttcttaattcctataaagatatgcatggtctgaatactactttaggaa 41518885  T
Q  454 cattgaattcaatatgtgtgatagga-atatgtttggtt 491  Q
    ||||||||||| |||| ||||| ||| | ||||||||||    
T  41518884 cattgaattcattatgggtgatcggataaatgtttggtt 41518846  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 192 - 290
Target Start/End: Complemental strand, 41547480 - 41547382
Alignment:
Q  192 gatcacgaagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgagcttagctgcctctggtcgaggaaacaatga 290  Q
    |||||||||||| | ||| ||||||||||  ||| || || ||||||||||||||||||| ||| ||||||||  || ||||||| | |||||||||||    
T  41547480 gatcacgaagtttagagtcttgcatgaaaaagtttcaaggctggaggatgattccaaactattgatgagcttaaatgtctctggtggtggaaacaatga 41547382  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 83 - 296
Target Start/End: Complemental strand, 41509119 - 41508906
Alignment:
Q  83 aattggaggaaacagtgactgagaaattggaaactataagtgatttggagaacaaaaatagaaaattggcggatgaaaagcgcaaagttgagacctcact 182  Q
    ||||| |||||||||||| |  ||| |||| || |||||| ||  ||  |||| |||| |||||||| |||||||| ||  | || | ||||| || |||    
T  41509119 aattgaaggaaacagtgaatacgaatttggcaattataagcgagctgaggaacgaaaacagaaaattagcggatgagaaatgtaagggtgagatcttact 41509020  T
Q  183 tgagtttttgatcacgaagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgagcttagctgcctctggtcgagga 282  Q
     |||| ||||| ||| ||||||| |  |||||||||||| |||||| |||||||||||| |||||| ||||   ||||  ||| |||||||||| | |||    
T  41509019 cgagtctttgaacacaaagttcagaacattgcatgaaagagttgcaaggttggaggatggttccaacctttcaatgagtgtagatgcctctggtggtgga 41508920  T
Q  283 aacaatgacgggga 296  Q
    ||| |||| |||||    
T  41508919 aacgatgaggggga 41508906  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 290
Target Start/End: Complemental strand, 41519223 - 41519132
Alignment:
Q  199 aagttcaaagtattgcatgaaagtgttgcacggttggaggatgattccaaacttttggtgagcttagctgcctctggtcgaggaaacaatga 290  Q
    ||||| |||| ||| |||||||| |||||| ||||||||||||||||||| ||||   ||||  ||| |||||||||| | |||||||||||    
T  41519223 aagtttaaagcatttcatgaaagagttgcaaggttggaggatgattccaacctttcaatgagtgtagatgcctctggtggtggaaacaatga 41519132  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 370 - 431
Target Start/End: Complemental strand, 41523791 - 41523729
Alignment:
Q  370 aaggttcatcatcaggtatta--aaattatgcatacatatcttaattcctataaagatatgcat 431  Q
    |||||||||||||||||||    ||||||||||| ||||| ||| |||||||||||||||||||    
T  41523791 aaggttcatcatcaggtatatggaaattatgcatgcatatttta-ttcctataaagatatgcat 41523729  T

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