View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_30 (Length: 205)
Name: NF4010_low_30
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_30 |
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| [»] chr5 (14 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 14)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 9302176 - 9302358
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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| T |
9302176 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgt-----caacattgtgaatatgtgaatgatattgcatgtgatattctgca |
9302270 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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| T |
9302271 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
9302358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 18 - 173
Target Start/End: Original strand, 9352321 - 9352475
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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| T |
9352321 |
catgtggtgcctgcatgatttcc-tttaaatatggtaagcttgttacatgttttcccaacattgtgaatatgtgaatgatactgcatgtgatattctgca |
9352419 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgt |
173 |
Q |
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| T |
9352420 |
agatgcttatgatattgaaatgagtttgaggttcatgatgaatatagctggcatgt |
9352475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 33 - 205
Target Start/End: Original strand, 9297949 - 9298121
Alignment:
| Q |
33 |
ggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatat |
132 |
Q |
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| T |
9297949 |
ggatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatatattaatgatactgcatgtgttattctgcaagatgcttatgatat |
9298048 |
T |
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| Q |
133 |
tgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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| T |
9298049 |
taaaatgagtttgagatgcatgatgaatatagctgccatgtctttatagtgttggcaatcagaaaacatcatt |
9298121 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 9332597 - 9332783
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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| T |
9332597 |
catgtggtgcctgtatgatttccttttgaatatagtaaccttgttagatgttttcccagcattgtgaatatgtgaatggtatcgcatgtggtattatgca |
9332696 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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||||||| |||||||| |||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9332697 |
agatgct-atgatattaaaatgaatttgagatgcatgatgaatatagctggcatgtcttcctagtgttggcaatcagaaaacctcatt |
9332783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 9367296 - 9367117
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgca |
117 |
Q |
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||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||| || |||||| |
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| T |
9367296 |
catgtggtgcctgcatgattcccctttgaatatggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttaatctgca |
9367197 |
T |
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| Q |
118 |
agatgcttatgatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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|||||||| |||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||||||||||| |
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| T |
9367196 |
--------atgatattaaaatgagtttgaggtgcacgatgaatatagctggcatgtcctccgagtgttggcaattagaaaacctcatt |
9367117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 35 - 173
Target Start/End: Original strand, 9305812 - 9305950
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
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|||||||||| ||||||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
9305812 |
atttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattttgcaagatgcttatgatattg |
9305911 |
T |
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| Q |
135 |
aaatgagtttgaggtgcatgatgaatatagctggcatgt |
173 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |
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| T |
9305912 |
aaatgagtttgaggttcatgatgaatatagctggcatgt |
9305950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 9293326 - 9293514
Alignment:
| Q |
18 |
catgtggtgcctgcaggatttccc-tttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
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|||||||||||| || || || || ||| ||||||||||||||||| ||||| |||||||||||||| | | ||||| | |||||||| |||||||| |
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| T |
9293326 |
catgtggtgcctacatgaattgccatttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgagactgcatgtgttattctgc |
9293425 |
T |
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| Q |
117 |
aagatgcttatga-tattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
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| T |
9293426 |
tagatgct-atgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtcttcatagtgttggcaatcataaaacctcatt |
9293514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 18 - 205
Target Start/End: Complemental strand, 9373223 - 9373035
Alignment:
| Q |
18 |
catgtggtgcctgcagga-tttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
| |
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|||||||||||| || || ||| ||||| ||||||||||||||||| ||||| |||||||||||||| | | ||||||| |||||||| |||||||| |
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| T |
9373223 |
catgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgttattctgc |
9373124 |
T |
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| Q |
117 |
aagatgcttatga-tattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
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||||||| |||| |||| ||||||||||||| |||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| |
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| T |
9373123 |
aagatgcc-atgaatattaaaatgagtttgagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcagaaaacatcatt |
9373035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 46 - 203
Target Start/End: Original strand, 9288834 - 9288991
Alignment:
| Q |
46 |
aatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatga-tattgaaatgagttt |
144 |
Q |
| |
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||||||||||||||||| ||||| ||||||||| |||| | | ||||||| |||||||| |||||||||||||||| |||| ||||||||||||||| |
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| T |
9288834 |
aatatggtaagcttgttacatgttagtccaacattgagaatttattaatgatactgcatgtgttattctgcaagatgct-atgaatattgaaatgagttt |
9288932 |
T |
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| Q |
145 |
gaggtgcatgatgaatatagctggcatgtctttgtagtgttggcaatcagaaaacctca |
203 |
Q |
| |
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||| |||||||||||||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
9288933 |
gagatgcatgatgaatatagctggcatgtcttctttgtgttggcaatcggaaaacctca |
9288991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 9309672 - 9309528
Alignment:
| Q |
18 |
catgtggtgcctgca-ggatttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgc |
116 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||||||||||||| | | | ||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
9309672 |
catgtggtgcctgcatggatttccctttgaatatggtaagcttgtcatacctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgc |
9309573 |
T |
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| Q |
117 |
aagatgcttatgatattgaaatgagtttgaggtgcatgatgaatat |
162 |
Q |
| |
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||||||| | |||||||||||| ||| || |||||||||||||| |
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| T |
9309572 |
aagatgc-tctgatattgaaattggttcaagatgcatgatgaatat |
9309528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 9348690 - 9348564
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
| |
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|||||| ||| ||||||||||| |||| || | | ||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
9348690 |
atttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaagatgc-tatgatattg |
9348592 |
T |
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| Q |
135 |
aaatgagtttgaggtgcatgatgaatat |
162 |
Q |
| |
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|||| ||| || |||||||||||||| |
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| T |
9348591 |
aaattggttcaagatgcatgatgaatat |
9348564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 35 - 162
Target Start/End: Complemental strand, 9356060 - 9355934
Alignment:
| Q |
35 |
atttccctttaaatatggtaagcttgtttgatgttttcccaacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattg |
134 |
Q |
| |
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|||||| ||| ||||||||||| |||| || | | ||||||||||||||||||| ||||||||||||||||||| |||||||||||| | |||||||| |
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| T |
9356060 |
atttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaatgatattgcatgtgatactctgcaagatgc-tctgatattg |
9355962 |
T |
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| Q |
135 |
aaatgagtttgaggtgcatgatgaatat |
162 |
Q |
| |
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|||| ||| || |||||||||||||| |
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| T |
9355961 |
aaattggttcaagatgcatgatgaatat |
9355934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 9309513 - 9309473
Alignment:
| Q |
165 |
ctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
| |
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|||||||||||| || |||||||||||||||||||||||| |
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| T |
9309513 |
ctggcatgtcttcctaatgttggcaatcagaaaacctcatt |
9309473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 205
Target Start/End: Complemental strand, 9355919 - 9355879
Alignment:
| Q |
165 |
ctggcatgtctttgtagtgttggcaatcagaaaacctcatt |
205 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |
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| T |
9355919 |
ctggcatgtcttcctaatgttggcaatcagaaaacctcatt |
9355879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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