View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_6 (Length: 460)
Name: NF4010_low_6
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 9 - 444
Target Start/End: Complemental strand, 49187476 - 49187044
Alignment:
| Q |
9 |
agcaaaggaaatggctaaggcggcactagagagatagagttcacccaagtgaccaacaatcatgatggatacaacttgtaaaagatattgtgaagatgtt |
108 |
Q |
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| T |
49187476 |
agcaaaggaaatggctaaggcggcactagagagatagagttcacctaagtgaccaacaatcatgatggacacaacttgtaaaagatattgtgaagatgtt |
49187377 |
T |
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| Q |
109 |
acagctaccataggacctgataggtaacaaatcctcttcaattctttcctgtaaatatcccaactaatttctctattcttcctctcttcttcatcaccat |
208 |
Q |
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| T |
49187376 |
acagctaccataggacctgataggtaacaaatcctcttcaattctttcctgtaaatatcccaactaatttctctattcttcctctcttcttcatcaccat |
49187277 |
T |
|
| Q |
209 |
tctctgctttcgaatcaatatgttttgataagagactctcctccatcactcttctctcttcacccattttcnnnnnnnnnnnnnnnnnnnnntacgggat |
308 |
Q |
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| T |
49187276 |
tctctgctttcgaatcaatatgttttgataagagactctcctccatcactcttctctcttcacccattttc---agagaagaagaagaagaatacgtgat |
49187180 |
T |
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| Q |
309 |
tgagattggaaagagagatatataaatagagtcggtaacgtatgacagtgttttgggtctctcgtgtctggtgcctttcgcctgtcaatttatattcaaa |
408 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49187179 |
tgagattggatagagagatatataaatagagtcggtaacgtatgacagtgttttgtgtctctcgtgtctggtgcctttcgcctgtcaatttatattcaaa |
49187080 |
T |
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| Q |
409 |
ttcaattttggtttttactatatacacccaatataa |
444 |
Q |
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| T |
49187079 |
ttcaattttggtttttactatatacacccaatataa |
49187044 |
T |
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