View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4010_low_8 (Length: 348)
Name: NF4010_low_8
Description: NF4010
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4010_low_8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 13 - 348
Target Start/End: Complemental strand, 33531693 - 33531358
Alignment:
| Q |
13 |
atacttcaggtacttgttaatgatgaataacttaatatgcttcactcaattaaatagtatacctgtcttaatcctctgaattaagaggggaagtgaccct |
112 |
Q |
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| T |
33531693 |
atacttcaggtacttgttaatgatgaataacttaatatgcttcactcaattaaatagtatacctttcttaatcctctgaattaagaggggaagtgaccct |
33531594 |
T |
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| Q |
113 |
ggtaatctggagttcggatgggagataagttaagttggaccaaaagttgtttcaatcggggttcaaactcgggaactcccaatcaatttgtaattaaata |
212 |
Q |
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| T |
33531593 |
ggtaatctggagttcggatgggagataagttaagtcggaccaaaagttatttcaatcggggttcaaactcgggaactcccaatcaatttgtaattaaata |
33531494 |
T |
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| Q |
213 |
aaacccactattacttgagctcaatcacttagttatattaatggttgtgtttctttttgtgttattgnnnnnnnatagaattgaaaattttaatgcaggt |
312 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
33531493 |
aaacccactattacttgggctcaatcacttagttatattaatggttgtgtttgtttttgtgttattgtttttttatagaattgaaaattttaatgcaggt |
33531394 |
T |
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| Q |
313 |
tgggagaagcagaaaaggcattgaactgcaataaag |
348 |
Q |
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| T |
33531393 |
tgggagaagcagaaaaggcattgaactgcaataaag |
33531358 |
T |
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