View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_high_1 (Length: 658)
Name: NF4011_high_1
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Complemental strand, 52731121 - 52730474
Alignment:
| Q |
1 |
cttccttttgcctacttcttggagaagttagtcctagtgttatcttcactaattaaaataaaagtttagtggtgcacataacataagtttacaatatgtt |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52731121 |
cttccttttgcctacttcttggaaaagttagtcctagtgttatcttcactaattaacataaaagtttagtggtgcacataacataagtttacaatatgtt |
52731022 |
T |
|
| Q |
101 |
aattgcaaatttgattagtttccannnnnnnnnnn-------gttcaggaaggagaggccagctattactttcaactttctcttgcagttctttggtctt |
193 |
Q |
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|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52731021 |
aattgcaaatttgaatagtttccattttttatttttattcttgttcaggaaggagaggccagctattactttcaactttctcttgcagttctttggtctt |
52730922 |
T |
|
| Q |
194 |
gcccttgtcgggtatgcaaattttcttttcccactcataacctacaaatcattagttagttaatttaaagtaaaataagaagaaaaatcgatggaaatca |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730921 |
gcccttgtcgggtatgcaaattttcttttcccactcataacctacaaatcattagttagttaatttaaagtaaaataagaagaaaaatcgatggaaatca |
52730822 |
T |
|
| Q |
294 |
tggttttaaattgtgtttgtggttataccgtgaaactattatattgttagaaaatgtggcggatataatcaaaatttatattgtggttgcaatgtcattg |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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| T |
52730821 |
tggttttaaattgtgtttgtggttataccgtgaaactattatattgttagaaaatgtggcagatataatcaaaatttatattgtggttgcgatgtcattg |
52730722 |
T |
|
| Q |
394 |
ctaagtcctcaaaatcgtttatattaagttgcaaaccgcaatttgaaaccagaaatattagtatgagtattgttttgttatattaaaagaaagaattgag |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||| |
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| T |
52730721 |
ctaagtcctcaaaatcgtttatattaagttgcaaaccgcaatttgaaaccagaaatattagtattagta-----ttagtatattaaaagaaagaattgag |
52730627 |
T |
|
| Q |
494 |
aaccctagtcatgaagctattaattaagtacatatttaatacggtactatagttaagataaattttgcattacacaggattacagccaaccagggtttct |
593 |
Q |
| |
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||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730626 |
aaccctagtaatgaagctattaattaagtacataattaatacggtaatatagttaagataaattttgcattacacaggattacagccaaccagggtttct |
52730527 |
T |
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| Q |
594 |
atttgcttggcttggacaacacatctccaacctttgcatcagctatacagaat |
646 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52730526 |
atttgcttggcttggacaacacatctccaacctttgcatcagctatacagaat |
52730474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 567 - 646
Target Start/End: Complemental strand, 7369407 - 7369328
Alignment:
| Q |
567 |
acaggattacagccaaccagggtttctatttgcttggcttggacaacacatctccaacctttgcatcagctatacagaat |
646 |
Q |
| |
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||||||||||||| || || |||||||| |||||||| ||||| |||||||| || |||||||||||||| ||||||||| |
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| T |
7369407 |
acaggattacagcaaatcaaggtttctacttgcttgggttggataacacatcccctacctttgcatcagcaatacagaat |
7369328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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