View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_high_11 (Length: 376)
Name: NF4011_high_11
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 19 - 317
Target Start/End: Complemental strand, 9659962 - 9659667
Alignment:
| Q |
19 |
cgagtatcccttt-actcttattaataccattttgcttatttaaaatattggtaaatactaattatttctccatgatttaactttagcaaataggtactt |
117 |
Q |
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| T |
9659962 |
cgagtatcccttttactcttattaataccattttgcttatt-aaaatattggtaactactaattatttcaccatgatttaactttagcaaataggtattt |
9659864 |
T |
|
| Q |
118 |
agtgataacaatttatattcacaatctcaacttgtatcaatataattttatttccacttttctctcttaaatgctaaatatcaatattttgctgcatctt |
217 |
Q |
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| T |
9659863 |
agtgataacaatttcaattcacaatctcaacttctatcaatataattttatttccacttttctctcttaaatgct-aatatcaatattttgctgcatctt |
9659765 |
T |
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| Q |
218 |
ctattatgaatattgatat--tatgtatctgtgtatgcatgcataccaagcgatcaatgtataaaggtatctcatgctgtcaataaaaatcaacccttta |
315 |
Q |
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| T |
9659764 |
ctattatgaatattgatattatatgtatccgtgt----atgcataccaagcgatcaatgtataaaggtaactcatgctgtcaataaaaatcaacccttta |
9659669 |
T |
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Back To:
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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 35999977 - 36000025
Alignment:
| Q |
161 |
aattttatttccacttttctctcttaaatgctaaatatcaatattttgc |
209 |
Q |
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| T |
35999977 |
aattttacttccacttttctctcttcggtgcttaatatcaatattttgc |
36000025 |
T |
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