View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4011_high_16 (Length: 261)
Name: NF4011_high_16
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_high_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 10986834 - 10987066
Alignment:
| Q |
19 |
cttttcaacgctaaagagtcatagatcatggctcgaaattcgtcttttctacgttcgaatttcaccttgtttaatcgatagtgttccggaatgtttaaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10986834 |
cttttcaacgctaaagagtcatagatcatggctcgaaattcgtcttttctacgttcgaatttcaccttgtttaatcgatagtgttccggaatgtttaaca |
10986933 |
T |
|
| Q |
119 |
ctatgtcacccaaaacgtgaaatcggtttttctcttgtaatcaacggttcaccaatccctgcaccctcttccgccccgccgcttccgctccgccgtgacc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10986934 |
ctatgtcacccaaaacgtgaaatcggtttttctcttgtaatcaacggttcaccaatccctgcaccctcttccgccccgccgcttccgctccgccgtgacc |
10987033 |
T |
|
| Q |
219 |
gtgtcgataaagagtctgctgaggttacctatg |
251 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| |
|
|
| T |
10987034 |
gtgtcgataaagagtctgccgaggttacctatg |
10987066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University