View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4011_high_2 (Length: 552)

Name: NF4011_high_2
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4011_high_2
NF4011_high_2
[»] chr4 (12 HSPs)
chr4 (72-291)||(47863450-47863668)
chr4 (96-291)||(56083445-56083630)
chr4 (191-285)||(5169489-5169582)
chr4 (96-287)||(12862495-12862676)
chr4 (191-287)||(51569901-51569996)
chr4 (96-167)||(6658647-6658718)
chr4 (72-112)||(6210672-6210712)
chr4 (72-106)||(24685091-24685125)
chr4 (126-167)||(16312768-16312809)
chr4 (72-112)||(24126265-24126305)
chr4 (72-119)||(47376598-47376646)
chr4 (72-112)||(51568875-51568915)
[»] chr3 (12 HSPs)
chr3 (73-291)||(11151371-11151579)
chr3 (191-285)||(39606421-39606514)
chr3 (191-285)||(54673431-54673524)
chr3 (186-285)||(48538031-48538130)
chr3 (191-285)||(37086523-37086609)
chr3 (198-287)||(52092674-52092763)
chr3 (225-287)||(34825787-34825849)
chr3 (225-287)||(46652719-46652781)
chr3 (72-112)||(52090741-52090781)
chr3 (126-167)||(46652821-46652862)
chr3 (129-157)||(34825709-34825737)
chr3 (127-167)||(36437336-36437376)
[»] chr1 (16 HSPs)
chr1 (75-291)||(24304087-24304294)
chr1 (191-285)||(13970780-13970874)
chr1 (221-286)||(51676128-51676193)
chr1 (191-287)||(35712624-35712719)
chr1 (96-167)||(51676228-51676299)
chr1 (72-157)||(24302999-24303083)
chr1 (72-112)||(21749235-21749275)
chr1 (72-157)||(9010960-9011044)
chr1 (72-157)||(17242006-17242090)
chr1 (72-112)||(49384446-49384486)
chr1 (72-119)||(17240784-17240831)
chr1 (129-164)||(30232644-30232679)
chr1 (96-167)||(35712544-35712615)
chr1 (191-277)||(41669692-41669779)
chr1 (72-112)||(9008826-9008866)
chr1 (1-49)||(52094465-52094513)
[»] chr8 (9 HSPs)
chr8 (72-290)||(40462337-40462545)
chr8 (221-291)||(9755878-9755948)
chr8 (72-112)||(14101036-14101076)
chr8 (96-167)||(9755775-9755846)
chr8 (96-167)||(26521893-26521964)
chr8 (226-285)||(38974597-38974656)
chr8 (226-285)||(39005695-39005754)
chr8 (225-287)||(26521791-26521853)
chr8 (73-141)||(40463523-40463590)
[»] scaffold0262 (1 HSPs)
scaffold0262 (72-291)||(2825-3032)
[»] chr6 (5 HSPs)
chr6 (195-285)||(21511668-21511758)
chr6 (196-266)||(12605064-12605133)
chr6 (196-274)||(25482329-25482406)
chr6 (72-112)||(9307089-9307129)
chr6 (73-157)||(7538329-7538413)
[»] chr7 (5 HSPs)
chr7 (196-287)||(7849044-7849133)
chr7 (192-288)||(23526548-23526644)
chr7 (192-287)||(47578392-47578486)
chr7 (72-157)||(5737244-5737328)
chr7 (72-119)||(5769246-5769293)
[»] chr5 (2 HSPs)
chr5 (96-167)||(27491167-27491238)
chr5 (221-287)||(27491059-27491124)
[»] chr2 (2 HSPs)
chr2 (126-157)||(29043524-29043555)
chr2 (225-287)||(29043412-29043474)
[»] scaffold0471 (1 HSPs)
scaffold0471 (72-112)||(10853-10893)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 72 - 291
Target Start/End: Complemental strand, 47863668 - 47863450
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatg 171  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  47863668 cttggagattccccctcgtcattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgctaactgtgtgatg 47863569  T
Q  172 atgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 271  Q
    ||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47863568 atgtggcacgctgactgatgtggcactgacacgtcataa-ttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 47863470  T
Q  272 tgataagttaaaaaaatcaa 291  Q
    ||||||||||||||||||||    
T  47863469 tgataagttaaaaaaatcaa 47863450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 96 - 291
Target Start/End: Original strand, 56083445 - 56083630
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatgtggcacgctgactgatgtggc 195  Q
    ||||||||||||||||||||| || | || ||||||||||||||||||| |||||||||||| | |||||||  ||||| |          ||| |||||    
T  56083445 gaagattctttgattttcaactctgatgccatctgactggattaatgagttgatgtggcacgctgactgtgtagtgatgag----------tgaagtggc 56083534  T
Q  196 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaatcaa 291  Q
    | |||||| ||||| ||| || || |||| |||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||    
T  56083535 attgacatatcatattttatatattttttttttttaaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaattaaaaaattcaa 56083630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 191 - 285
Target Start/End: Original strand, 5169489 - 5169582
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    |||||||||||| |||||||||||||  | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  5169489 gtggcactgacacgtcataatttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 5169582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 96 - 287
Target Start/End: Complemental strand, 12862676 - 12862495
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatgtggcacgctgactgatgtggc 195  Q
    |||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||| | |||||||  |||||         || |||  ||||    
T  12862676 gaagattctttgattttcaaccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgtagtgatg---------ga-tgaaatggc 12862587  T
Q  196 actgacatgtcataatttttaaatcttttatttttaaaagtatgtt-aaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    ||||||| ||||||||||||  || ||||||||||||||  ||||| ||||| |||||||||| |||| |||| | ||||||| |||||||||    
T  12862586 actgacacgtcataattttt-tattttttatttttaaaataatgttaaaaaaagtgaaatacctaaaacacccttaatgataaattaaaaaaa 12862495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 191 - 287
Target Start/End: Complemental strand, 51569996 - 51569901
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||||| |||||||||||||||| ||| ||||||||||| |||||   || |||||||||||| ||||||| | ||||||| |||||||||    
T  51569996 gtggcactgacacgtcataatttttaaat-tttaatttttaaaagaatgtttggaaagtgaaatacccagaatacccttaatgataaattaaaaaaa 51569901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 6658718 - 6658647
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||||||||||||||  | |  |||||||||||||||||||||||||||||||| | |||||||    
T  6658718 gaagattctttgattttcaacccggatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 6658647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 6210672 - 6210712
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  6210672 cttggagattcccccttgccattagaagattctttgatttt 6210712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 24685091 - 24685125
Alignment:
Q  72 cttggagattccccctcgccattagaagattcttt 106  Q
    ||||||||||||||||||||||| |||||||||||    
T  24685091 cttggagattccccctcgccatttgaagattcttt 24685125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Original strand, 16312768 - 16312809
Alignment:
Q  126 atctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    ||||||||||||||||||| |||||||||||| | |||||||    
T  16312768 atctgactggattaatgagatgatgtggcacgctgactgtgt 16312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 24126265 - 24126305
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  24126265 cttggaaattccccctcgccatttgaagattctttggtttt 24126305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 47376598 - 47376646
Alignment:
Q  72 cttggagattccccctc-gccattagaagattctttgattttcaaccct 119  Q
    ||||||||||||||| | ||||||||||||||||||| |||| ||||||    
T  47376598 cttggagattccccccctgccattagaagattctttggttttgaaccct 47376646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 51568875 - 51568915
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    ||||||||| |||||||| ||||||||||||||||| ||||    
T  51568875 cttggagatcccccctcgacattagaagattctttggtttt 51568915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 140; Significance: 4e-73; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 73 - 291
Target Start/End: Complemental strand, 11151579 - 11151371
Alignment:
Q  73 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatga 172  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  11151579 ttggagattcccccttgccatgagaagattctttgattttcaaccctcagacaatctgactggattcatgagctgatgtggcacgttaactgtgtgatga 11151480  T
Q  173 tgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttat 272  Q
              ||| ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  11151479 ----------tgagtgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccataat 11151390  T
Q  273 gataagttaaaaaaatcaa 291  Q
    ||||| |||||||||||||    
T  11151389 gataaattaaaaaaatcaa 11151371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 39606514 - 39606421
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    |||||||||||| |||||| ||||||  | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  39606514 gtggcactgacacgtcatattttttattt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 39606421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 54673524 - 54673431
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    ||||||||||||  ||||||||||| | | |||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  54673524 gtggcactgacacatcataattttttatt-ttttatttttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 54673431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 48538031 - 48538130
Alignment:
Q  186 ctgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    |||| |||||||||||| |||| | |||||  |  |||||||||||||| |||||| ||||||||||||||| || |||||||| ||||||| |||||||    
T  48538031 ctgaagtggcactgacacgtcaaattttttttaatttttatttttaaaattatgttgaaaatgtgaaatacctaatatacccctaatgataaattaaaaa 48538130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 37086609 - 37086523
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    |||||||||||| ||||||||||||||        |||||||||||||||| |||| |||||||||| |||||||||||  |||||| |||||||    
T  37086609 gtggcactgacacgtcataatttttaa--------tttttaaaagtatgtttaaaacgtgaaatacctaaaatacccctagtgataaattaaaaa 37086523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 198 - 287
Target Start/End: Complemental strand, 52092763 - 52092674
Alignment:
Q  198 tgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    ||||| ||||||||||||  || ||||||||||||||| |||||   || |||||||||| ||||||||| | ||||||| |||||||||    
T  52092763 tgacacgtcataatttttttattttttatttttaaaagaatgtttggaaagtgaaatacctaaaatacccttaatgataaattaaaaaaa 52092674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Original strand, 34825787 - 34825849
Alignment:
Q  225 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  34825787 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 34825849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 46652781 - 46652719
Alignment:
Q  225 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  46652781 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 46652719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 52090741 - 52090781
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  52090741 cttggagatcccccctcgacattagaagattctttgatttt 52090781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 46652862 - 46652821
Alignment:
Q  126 atctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    ||||||||||||||||||| |||||||| ||||| |||||||    
T  46652862 atctgactggattaatgagttgatgtggtacgttgactgtgt 46652821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 157
Target Start/End: Original strand, 34825709 - 34825737
Alignment:
Q  129 tgactggattaatgagctgatgtggcacg 157  Q
    |||||||||||||||||||||||||||||    
T  34825709 tgactggattaatgagctgatgtggcacg 34825737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 36437336 - 36437376
Alignment:
Q  127 tctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||||||||| |||||||||||| | |||||||    
T  36437336 tctgactggattaatgagatgatgtggcacgctgactgtgt 36437376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 127; Significance: 3e-65; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 75 - 291
Target Start/End: Complemental strand, 24304294 - 24304087
Alignment:
Q  75 ggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatgatg 174  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||||||||||| | ||||||||||||||    
T  24304294 ggagatttcccctcgccattagaagattctttgattttcaaccctcaggcaatctgattggattaatgaattgatgtggcacgctgactgtgtgatgatg 24304195  T
Q  175 tggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta-tg 273  Q
     |          ||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||    
T  24304194 ag----------tgaagtggcactgacacgtcataattttttaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctaattg 24304105  T
Q  274 ataagttaaaaaaatcaa 291  Q
    |||| |||||||||||||    
T  24304104 ataaattaaaaaaatcaa 24304087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 191 - 285
Target Start/End: Complemental strand, 13970874 - 13970780
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    ||||||| |||| ||||||||||||  || ||||||| |||||| |||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  13970874 gtggcaccgacacgtcataatttttttattttttattgttaaaattatgttaaaaatgtgaaatacctaaaatacccctaatgataaattaaaaa 13970780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 51676193 - 51676128
Alignment:
Q  221 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaa 286  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| ||||||||    
T  51676193 ttttatttttaaaagtatgttaaaaatgtgaaatacctaaaatacccttaatgataaattaaaaaa 51676128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 191 - 287
Target Start/End: Original strand, 35712624 - 35712719
Alignment:
Q  191 gtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||||| |||||||||||| | | |||||||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  35712624 gtggcactgacacgtcataattttttatt-ttttatttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 35712719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 51676299 - 51676228
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||||||||||||||| | || ||||||||||||||||||  |||||||||||| | |||||||    
T  51676299 gaagattctttgattttcaaccctgatgccatctgactggattaatgaattgatgtggcacgctgactgtgt 51676228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 24302999 - 24303083
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 157  Q
    |||||||||||||||| || |||||||||||||||||||| | ||||||| || |||||| |||||||||| | |||| |||||||    
T  24302999 cttggagattcccccttgcaattagaagattctttgatttac-accctcaagccatctgaatggattaatgtgatgatttggcacg 24303083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 21749275 - 21749235
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  21749275 cttggagattcccccttgccattagaagattctttgatttt 21749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 9011044 - 9010960
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 157  Q
    |||| ||||| ||||| ||||||||||||||||||| ||| || ||| ||  | ||||||||||||||||| | ||||||||||||    
T  9011044 cttgtagatttccccttgccattagaagattctttggtttacacccc-caaaccatctgactggattaatgtgatgatgtggcacg 9010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 17242090 - 17242006
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 157  Q
    |||| ||||||||||| ||||||||||||||||||| ||| | |||| ||  | |||||||| |||||||| | ||||||||||||    
T  17242090 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacg 17242006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 49384486 - 49384446
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    ||||||||||||||||||||||| |||||||||||| ||||    
T  49384486 cttggagattccccctcgccatttgaagattctttggtttt 49384446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 17240784 - 17240831
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccct 119  Q
    |||| ||||||||||| ||||||||||||||||||| |||| ||||||    
T  17240784 cttgtagattcccccttgccattagaagattctttggttttgaaccct 17240831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 164
Target Start/End: Complemental strand, 30232679 - 30232644
Alignment:
Q  129 tgactggattaatgagctgatgtggcacgttaactg 164  Q
    ||||||||||||||||||||||||||| ||||||||    
T  30232679 tgactggattaatgagctgatgtggcatgttaactg 30232644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 35712544 - 35712615
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||| ||| || |||| | |  ||||||||||||||||||||||||||| |||| | |||||||    
T  35712544 gaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtgacacgctgactgtgt 35712615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 191 - 277
Target Start/End: Complemental strand, 41669779 - 41669692
Alignment:
Q  191 gtggcactgacatgtcataatttttaa-atcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataa 277  Q
    |||||||||||| ||||| ||||||   || |||||||||||||| |||||| ||||||  |||||||  |||||||||| |||||||    
T  41669779 gtggcactgacacgtcatgattttttttattttttatttttaaaattatgttgaaaatgcaaaataccttaaatacccctaatgataa 41669692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 9008826 - 9008866
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||| ||||||||||| ||||||||||||||||||| ||||    
T  9008826 cttgtagattcccccttgccattagaagattctttggtttt 9008866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 52094465 - 52094513
Alignment:
Q  1 attgtttttcttttctttgacaaagttttcatcatcttttcttggatta 49  Q
    ||||||||||||||||||||||||| |||  | ||||||||||| ||||    
T  52094465 attgtttttcttttctttgacaaagctttagttatcttttcttgtatta 52094513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 2e-63; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 40462337 - 40462545
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||  |||    
T  40462337 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcacgctgactgtgcaatg 40462436  T
Q  172 atgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 271  Q
    |          ||| ||| ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |    
T  40462437 a----------tgagtgaagtggcactgacacatcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaacccccaaaatacccctaa 40462526  T
Q  272 tgataagttaaaaaaatca 290  Q
    |||||| ||||||||||||    
T  40462527 tgataaattaaaaaaatca 40462545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 9755878 - 9755948
Alignment:
Q  221 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaatcaa 291  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||| |||||||| ||||    
T  9755878 ttttatttttaaaagtatgttaaaaatgtgaaataccaaaaatacccttaatgataaattaaaaaattcaa 9755948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 14101076 - 14101036
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||||||||||||||| ||||||||||||||||||||||||    
T  14101076 cttggagattcccccttgccattagaagattctttgatttt 14101036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 9755775 - 9755846
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    ||||||| |||||||||||||||| | |  ||||||||||||||||||| |||||| ||||| | |||||||    
T  9755775 gaagattatttgattttcaaccctaatgtcatctgactggattaatgagttgatgtagcacgctgactgtgt 9755846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 26521964 - 26521893
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||| ||| || |||| | |  |||||||||||||||||||||||||||||||| | |||||||    
T  26521964 gaagattctttggtttacacccctgatgtcatctgactggattaatgagctgatgtggcacgctgactgtgt 26521893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 38974656 - 38974597
Alignment:
Q  226 tttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    ||||| ||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  38974656 ttttttaaattatgttaaaaatgtgaaatatctaaaatacccctaatgataaattaaaaa 38974597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 226 - 285
Target Start/End: Complemental strand, 39005754 - 39005695
Alignment:
Q  226 tttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    ||||| ||| |||||||||||||||||||| | ||||||||||| ||||||| |||||||    
T  39005754 ttttttaaattatgttaaaaatgtgaaatatctaaaatacccctaatgataaattaaaaa 39005695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 26521853 - 26521791
Alignment:
Q  225 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  26521853 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 26521791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 40463590 - 40463523
Alignment:
Q  73 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaat 141  Q
    |||||||||||||||  |||||||||||||||||||||| | |||| || || |||||| |||||||||    
T  40463590 ttggagattcccccttaccattagaagattctttgatttac-acccccaagccatctgattggattaat 40463523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 2825 - 3032
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgtgatg 171  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||||| ||||    
T  2825 cttggagattcccccttgccattagaagattctttgattttcaaccctgaggcaatctgactggattaatgagctgatgtggcatgctgactgtgcgatg 2924  T
Q  172 atgtggcacgctgactgatgtggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacccctta 271  Q
    |          ||| ||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||||| |    
T  2925 a----------tgagtgaagtggc-ctgacacgtcataatttttaaatcttttatttttaaaagtatgttaaaaatctgaaa-ccccaaaatacccctaa 3012  T
Q  272 tgataagttaaaaaaatcaa 291  Q
    |||||| |||||||||||||    
T  3013 tgataaattaaaaaaatcaa 3032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 195 - 285
Target Start/End: Original strand, 21511668 - 21511758
Alignment:
Q  195 cactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaa 285  Q
    |||||||| |||||||| |||  || ||||||||||||||||||||| ||||| | ||||||| |||||||||||  |||||| |||||||    
T  21511668 cactgacacgtcataatgtttttattttttatttttaaaagtatgtttaaaatataaaatacctaaaatacccctagtgataaattaaaaa 21511758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 12605133 - 12605064
Alignment:
Q  196 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaatacc 266  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || |||| |||||||||| ||||||||    
T  12605133 actgacacgtcataatttttatattttttatttttaaaagtatatttaaaa-gtgaaatacctaaaatacc 12605064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 196 - 274
Target Start/End: Original strand, 25482329 - 25482406
Alignment:
Q  196 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatga 274  Q
    ||||||| ||||||||||||| || |||||||||||||||||| || |||| | |||||||| ||||||||||| ||||    
T  25482329 actgacacgtcataatttttatattttttatttttaaaagtatatttaaaa-gagaaatacctaaaatacccctaatga 25482406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 9307129 - 9307089
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    ||||||||||||||||||||||| ||| |||||||||||||    
T  9307129 cttggagattccccctcgccatttgaatattctttgatttt 9307089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 7538329 - 7538413
Alignment:
Q  73 ttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 157  Q
    |||||||||||||||||  |   ||||||||||||| || |   ||| |||| || |||||||||||||||| ||||||||||||    
T  7538329 ttggagattccccctcgtaaaatgaagattctttgagttacccgcctaaggccatatgactggattaatgagatgatgtggcacg 7538413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 196 - 287
Target Start/End: Complemental strand, 7849133 - 7849044
Alignment:
Q  196 actgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||||||||||||||| |  |||| |||||| | |||||||||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  7849133 actgacatgtcataatttttaatt--tttaattttaacattatgttaaaaagatgaaataccaaaaatacccttaatgataaattaaaaaaa 7849044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 23526644 - 23526548
Alignment:
Q  192 tggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaat 288  Q
    ||||||||||| ||||| ||||||| || || |||||||  ||  ||| ||||||||||||||||| ||||||||| | ||||||| ||||||||||    
T  23526644 tggcactgacacgtcattatttttatattttatatttttttaaaaatgctaaaaatgtgaaatacctaaaatacccttaatgataaattaaaaaaat 23526548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 47578486 - 47578392
Alignment:
Q  192 tggcactgacatgtcataatttttaaatcttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    ||||| ||||| |||||||||||| | | |||| ||||||||| |||||||||||  ||||||||  ||||||||| | ||||||| |||||||||    
T  47578486 tggcaatgacacgtcataattttttatt-ttttgtttttaaaattatgttaaaaagatgaaatacttaaaatacccttaatgataaattaaaaaaa 47578392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 5737244 - 5737328
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacg 157  Q
    |||| ||||||||||| ||||||||||||||||||| ||| | |||| ||  | |||||||| |||||||| | ||||||||||||    
T  5737244 cttgtagattcccccttgccattagaagattctttggtttac-acccccaaaccatctgactagattaatgtgatgatgtggcacg 5737328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 5769293 - 5769246
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgattttcaaccct 119  Q
    |||| ||||||||||| ||||||||||||||||||| |||| ||||||    
T  5769293 cttgtagattcccccttgccattagaagattctttggttttgaaccct 5769246  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 96 - 167
Target Start/End: Complemental strand, 27491238 - 27491167
Alignment:
Q  96 gaagattctttgattttcaaccctcaggcaatctgactggattaatgagctgatgtggcacgttaactgtgt 167  Q
    |||||||||||| ||| || |||| | || |||||||||||| ||||||||||||||||||| |||||||||    
T  27491238 gaagattctttggtttacacccctgatgccatctgactggatcaatgagctgatgtggcacgctaactgtgt 27491167  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 221 - 287
Target Start/End: Complemental strand, 27491124 - 27491059
Alignment:
Q  221 ttttatttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||||||| |||||| ||||  ||||||||| ||||||||| | ||||||| |||||||||    
T  27491124 ttttatttttaaaattatgtt-aaaagatgaaatacctaaaatacccttaatgataaattaaaaaaa 27491059  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 157
Target Start/End: Complemental strand, 29043555 - 29043524
Alignment:
Q  126 atctgactggattaatgagctgatgtggcacg 157  Q
    ||||||||||||||||||||||||||||||||    
T  29043555 atctgactggattaatgagctgatgtggcacg 29043524  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 225 - 287
Target Start/End: Complemental strand, 29043474 - 29043412
Alignment:
Q  225 atttttaaaagtatgttaaaaatgtgaaatacccaaaataccccttatgataagttaaaaaaa 287  Q
    |||||||||| |||||||||||  ||||||||| ||||||||| | ||||||| ||| |||||    
T  29043474 atttttaaaattatgttaaaaagatgaaatacctaaaatacccttaatgataaattacaaaaa 29043412  T

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Target: scaffold0471 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 10853 - 10893
Alignment:
Q  72 cttggagattccccctcgccattagaagattctttgatttt 112  Q
    |||||| |||||||||||||||| |||||||||||| ||||    
T  10853 cttggaaattccccctcgccatttgaagattctttggtttt 10893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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