View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_high_21 (Length: 227)
Name: NF4011_high_21
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 177048 - 176967
Alignment:
| Q |
133 |
tagataacaaaatgaaatgaataccttcttcaccaaaagctacacgacattacagt---attagtcgcaagtcgcaacaaac |
211 |
Q |
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| T |
177048 |
tagataacaaaatgaaatgaataccttcttcaccaaaagctacacgacattacagtattattagtcgcaagtcgcaacaaac |
176967 |
T |
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Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 12514927 - 12514832
Alignment:
| Q |
8 |
gacatcatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttcnnnnnnnctctcatcaccttctttagattccatttgact |
103 |
Q |
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| T |
12514927 |
gacataatcataagagtcagcaaaagaaaatagctttaacatagaaactttgtgttctttttttctctcatcaccttctttggattccatttgact |
12514832 |
T |
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