View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4011_high_3 (Length: 543)
Name: NF4011_high_3
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 17 - 513
Target Start/End: Complemental strand, 2758770 - 2758287
Alignment:
| Q |
17 |
gtgtatatgatcaaaaatgaaagtgagaaaagcaattttcaactccagtttttcaaatccaattcctgaaggcccatacttactgttgttcccaagtgga |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||| |
|
|
| T |
2758770 |
gtgtatatgatcaaaaatgaaagtgagaaaagcaattttcaactccagtttgtcaaatccaattcctgaaggcctatacttact-ttgttcccaagtgga |
2758672 |
T |
|
| Q |
117 |
aaaagaaagggtaagaaaatttctttttccaccgtccttccatctcatatgtcttccgaaattttaaagatagtcatcggattttgtaattcgaaatgag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
2758671 |
aaaagaaagggtaagaaaatttctttttccaccgtccttccatctcatatgtcttccgaaattttaaagatagtcatcggattttgtaattcaaaatgag |
2758572 |
T |
|
| Q |
217 |
gtttttcctatttttagagtgcnnnnnnnttagctacaatcgttttagtgacaattcaaccgtgacaaacttttccccctaccaattcggattataaaat |
316 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
2758571 |
gtttttcctatttttagagtgcaaaaaaattagctacagtcgttttagtgacaattcaac-gtgacaaacttttccccctaccaattgggattataaaat |
2758473 |
T |
|
| Q |
317 |
tcaaaagataagtacttcatatagatcgaactctgaacttaacattccttatgtcaaaatcaattaattttcacatgattttttaacacaagagggagtt |
416 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
2758472 |
tcaaaagataagtacttcatatagatcaaactctgaacttaacattccttatgtcaaaatcaattaattttcacctgattttttaacacaagagggggtt |
2758373 |
T |
|
| Q |
417 |
cgaaccatgtatagagggtgttcagattataaaatctgaaaaaacaatgacttcagattttacaataccaatgcctatacatgtttcgaacccctcc |
513 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2758372 |
cgaaccatgtatagagggtgttgagattataaaatc-----------cgacttcatattttacaataccaacgcctatacatgtttcgaacccctcc |
2758287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University