View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_15 (Length: 320)
Name: NF4011_low_15
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 311
Target Start/End: Complemental strand, 28217082 - 28216780
Alignment:
| Q |
19 |
aaagattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaat |
118 |
Q |
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| T |
28217082 |
aaagattaagaaggagaagacgtgtgtcccaatggaagagactgaaaaagcatcgctgtgggacaggtgttttgatggaatgggttttgtggacagcaat |
28216983 |
T |
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| Q |
119 |
ctaagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttggga |
207 |
Q |
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| T |
28216982 |
ctaagcttcacaaaa-atgtgcaggaggtgaaggagtctgggttggaaaaggctagtgagatgcttgtggcatacaaccttcgctgtgctttacttcgga |
28216884 |
T |
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| Q |
208 |
aggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatat |
307 |
Q |
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| T |
28216883 |
aggtgattacggaccaatttcaatctgtattgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatat |
28216784 |
T |
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| Q |
308 |
tctt |
311 |
Q |
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|||| |
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| T |
28216783 |
tctt |
28216780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 28233123 - 28232823
Alignment:
| Q |
22 |
gattaagaaggagaagacgtgtgtcccaatggaagagactgataaagcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatcta |
121 |
Q |
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| T |
28233123 |
gattaagaaggagaagacttgtgtcccaatggaagggactgatatagcatcgctgtgggacaggaggttcgatggaatgggttttgtggacagcaatcta |
28233024 |
T |
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| Q |
122 |
agcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaaaggctagtgatatgcttgtgg-----------cgctctgctttacttgggaagg |
210 |
Q |
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| T |
28233023 |
agcttcacaaaagacgtgcaggaggtgaaggagtctgggttggaaaaagctggtgagattcttgtggcgtacagccttcgctctgctttacttgggaagg |
28232924 |
T |
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| Q |
211 |
tgattatggaccaatttcaatctgtactgggacatgaaagcaaccgccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatattct |
310 |
Q |
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| T |
28232923 |
tgattacggaccaattccaagctttagtgggacatcatagcaactgccaagacgaactgattgcaaccaaaggaaaattgaaaatagccaatgatactct |
28232824 |
T |
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| Q |
311 |
t |
311 |
Q |
| |
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| T |
28232823 |
t |
28232823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 68 - 311
Target Start/End: Complemental strand, 28237906 - 28237652
Alignment:
| Q |
68 |
gcatcgctgcgggacaggagtttcgatggaataggttttgtggacagcaatctaagcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaa |
167 |
Q |
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| T |
28237906 |
gcatcgctgtgggatgggaggtttgatggaatggattttgtggacagaaatctatgcttcgcaaaagatgtgcaggaggtgaaggagtctgggttggaaa |
28237807 |
T |
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| Q |
168 |
aggctagtgatatgcttgtggcg-----------ctctgctttacttgggaaggtgattatggaccaatttcaatctgtactgggacatgaaagcaaccg |
256 |
Q |
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| T |
28237806 |
aagctagtgagatgcttgtggcgtacaaccttcgctctgctttacttgggaaggtgattatggaccaatttcaatctgtactaggacatgaaagcaactg |
28237707 |
T |
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| Q |
257 |
ccgagacgaactgaatgcaaccaaagaaaaattaaaaatagccaatgatattctt |
311 |
Q |
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|| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
28237706 |
ccaagacgaactgaatgcaaccaaagaaaaattgaaaatagccaatgatattctt |
28237652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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