View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_16 (Length: 275)
Name: NF4011_low_16
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_16 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 13453 - 13189
Alignment:
| Q |
1 |
taacaaagcaaatctttgatttgggtaatgatatgaaagatttgtaaggctttgatttggtgttgaaatgagtttgaatttgtatgagtttgtgctaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13453 |
taacaaagcaaatctttgatttgggtaatgatatgaaagatttgtaaggctttgatttggtgttgaaatgagtttgaatttgtatgagtttgtgctaatc |
13354 |
T |
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| Q |
101 |
atgtttgtgtagttaaaagactttgatttttgtgctcaagattccttgcttagtatagagaagagaaatgctgcttctgttgataccattgttcggttgg |
200 |
Q |
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| T |
13353 |
atgtttgtgtcgttaaaagactttgatttttgtgctcaagattccttgcttagtatagagaagagaaatgctgcttctgttgataccattgttcggttgg |
13254 |
T |
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| Q |
201 |
ttttgtattgcttattttgattaataaagtcaaaaaacaatagattttgttgacccttttctctg |
265 |
Q |
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| T |
13253 |
ttttgtattgcttattttgattaataaagtcaaaaaacaatagattttgttgacccttttctctg |
13189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1966092 - 1965959
Alignment:
| Q |
1 |
taacaaagcaaatctttgatttgggtaatgatatgaaagatttgtaaggctttgatttggtgttgaaatgagtttgaatttgtatgagtttgtgctaatc |
100 |
Q |
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| T |
1966092 |
taacaaagcaaatctttgatttgggtaatgatatgaaagatttgtaaggctttgctttggtgttgaaatgagtttgaatctgtatgagtttgtgctaatc |
1965993 |
T |
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| Q |
101 |
atgtttgtgtagttaaaagactttgatttttgtg |
134 |
Q |
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| T |
1965992 |
atgtttgtgtcgttaaaagactttgatttttgtg |
1965959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 10 - 134
Target Start/End: Original strand, 25457320 - 25457444
Alignment:
| Q |
10 |
aaatctttgatttgggtaatgatatgaaagatttgtaaggctttgatttggtgttgaaatgagtttgaatttgtatgagtttgtgctaatcatgtttgtg |
109 |
Q |
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| T |
25457320 |
aaatctttgatttgggtaatgatatgaaagatttgtaaggctttgatttggtgttgaaatgagtttgaatctgtatgagtttgtgctaatcatgtttgtg |
25457419 |
T |
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| Q |
110 |
tagttaaaagactttgatttttgtg |
134 |
Q |
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| T |
25457420 |
tcgttgaaagactttgatttttgtg |
25457444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 40977756 - 40977625
Alignment:
| Q |
133 |
tgctcaagattccttgcttagtatagagaagagaaatgctgcttctgttgataccattgttcggttggttttgtattgcttattttgattaataaagtca |
232 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||| ||||| |||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
40977756 |
tgctcaagattccttgcttagtctagagaagagaaatgctggttctgtggatactattgttcggtaggttttgtattgcttattttgattaaaaaagtca |
40977657 |
T |
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| Q |
233 |
aaaaacaatagattttgttgacccttttctct |
264 |
Q |
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|||||||||||||||||| |||||||||||| |
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| T |
40977656 |
gaaaacaatagattttgttaacccttttctct |
40977625 |
T |
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