View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_18 (Length: 267)
Name: NF4011_low_18
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 52731077 - 52731319
Alignment:
| Q |
8 |
agataatactaggactaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaaca |
107 |
Q |
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| T |
52731077 |
agataacactaggactaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaaca |
52731176 |
T |
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| Q |
108 |
cccatgttaagggcagctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaaccgttctggtatggagc |
207 |
Q |
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| T |
52731177 |
cccatgttaagggcagctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaaccgttctggtatggagc |
52731276 |
T |
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| Q |
208 |
accacattctccccgaagatccacctgaatcagccattactgt |
250 |
Q |
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| T |
52731277 |
accacattctccccgaagatccacctgaatcagccattactgt |
52731319 |
T |
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Back To:
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Target: chr1 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 22 - 190
Target Start/End: Original strand, 7370192 - 7370360
Alignment:
| Q |
22 |
ctaacttttccaagaagtaggcaaaaggaaggaggagaagaaaagcaataatattgcggtaaactgggaaaacaagtttgctaacacccatgttaagggc |
121 |
Q |
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|||||||||||||||| || ||||| |||||||||||||| |||||||| || || | || || |||||||||||||||||||| ||||||||||| || |
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| T |
7370192 |
ctaacttttccaagaaataagcaaatggaaggaggagaagcaaagcaatgatgtttctatagacagggaaaacaagtttgctaactcccatgttaagtgc |
7370291 |
T |
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| Q |
122 |
agctcttgagacgacatggaaaccagcatatccaaactgcagggccaacatggccgcatgcagctgaaa |
190 |
Q |
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| T |
7370292 |
agctcttgaaacaacatggaaaccagcataaccaaactgcaaggccaacatggccacatgcagctgaaa |
7370360 |
T |
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