View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4011_low_2 (Length: 600)
Name: NF4011_low_2
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 1 - 586
Target Start/End: Complemental strand, 36093219 - 36092632
Alignment:
| Q |
1 |
aatatgccaatgtagtagtagtagtgcatgtgattgagataatgaaaatacaggttgggagtgatggtagcatttgtaaaaaggagacaaatttgaagag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36093219 |
aatatgccaatgtagtagtagtagtgcatgtgattgagataatgaaaatacaggttgggagtgatggtagcatttgtaaaaaggagacaaatttgaagag |
36093120 |
T |
|
| Q |
101 |
gggctaatgatgcagaaggtgggaactttagataaggacgtgtatggctgtatgcaattatagataggtcgtgagcaccatcatatgatgatataataat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36093119 |
gggctaatgatgcagaaggtgggaactttagataaggacgtgtatggctgtatgcaattatagataggtcgtgagcaccatcatatgatgatataataat |
36093020 |
T |
|
| Q |
201 |
taattaattggtttgagattctagtttggtgtttgtttgaaaaccaagtgtatagtttggttgcataatgaactacatttatatata--ggaattatttg |
298 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36093019 |
taattaattggtttgagactctagtttggtgtttgtttgaaaaccaagtgtatagtttggttgcataatgaactacatttatatatataggaattatttg |
36092920 |
T |
|
| Q |
299 |
gtggtattgacgtaacggaacaacacaacctcaagtgtggcctaaccctagttggttggttttatttcaatttaggttgttggtgacaacatattcaaca |
398 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092919 |
gtggtattgacgtaacggaacaacacaacctcaagtgtggcctgcccctagttggttggttttatttcaatttaggttgttggtgacaacatattcaaca |
36092820 |
T |
|
| Q |
399 |
gaagcatgtgtaaatgtggactatacgggattaatcatttctggtacaccatatttgtcaacttatttatcatatgcaaattatattttgtttttgataa |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092819 |
gaagcatgtgtaaatgtggactatacgggattaatcatttctggtacacaatatttgtcaacttatttatcatatgcaaattatattttgtttttgataa |
36092720 |
T |
|
| Q |
499 |
gtaatcatatgcaaacaattaggaattctatacagatgacaataactttgctaaacagtaattcatgatctgaacctacatcacaggt |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36092719 |
gtaatcatatgcaaacaattaggaattctatacagatgacaatagctttgctaaacagtaattcatgatctgaacctacatcacaggt |
36092632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University