View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_20 (Length: 259)
Name: NF4011_low_20
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7739289 - 7739524
Alignment:
| Q |
9 |
aggagcagcacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgtta |
108 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||||||||||||||||||| |
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| T |
7739289 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaatttgctcaatccagtagggatagcaccacacagttggttaaagctgacgtta |
7739388 |
T |
|
| Q |
109 |
aactgggaaagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggccta |
208 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7739389 |
aactgggaaagagacggtagggagccgaacgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaactggccta |
7739488 |
T |
|
| Q |
209 |
ggaaagtggggatcgacccactaagactgttggaac |
244 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
7739489 |
ggaaagtggggatcgacccactaagactgttggaac |
7739524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7726971 - 7727206
Alignment:
| Q |
9 |
aggagcagcacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgtta |
108 |
Q |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7726971 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacatta |
7727070 |
T |
|
| Q |
109 |
aactgggaaagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggccta |
208 |
Q |
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||||| ||||||||||||| ||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7727071 |
aactgcgaaagagacggtatggagccgaacgacgcgggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7727170 |
T |
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| Q |
209 |
ggaaagtggggatcgacccactaagactgttggaac |
244 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||| |
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| T |
7727171 |
gaaaagtggggatcggcccactaagactgttggaac |
7727206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7731131 - 7731366
Alignment:
| Q |
9 |
aggagcagcacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgtta |
108 |
Q |
| |
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||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||| ||| |
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| T |
7731131 |
aggagcaccacaaaggcatttattatgatcaaacgaactctttgcaaacttgctcaatccagtagggatagcaccacacagttggttaaagctgacatta |
7731230 |
T |
|
| Q |
109 |
aactgggaaagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggccta |
208 |
Q |
| |
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||||| ||||||||||||| ||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7731231 |
aactgcgaaagagacggtatggagccgaacgacgccggaataacaccggataactggttgttagacaaatcaaactcctgtaagcccttcaactggccta |
7731330 |
T |
|
| Q |
209 |
ggaaagtggggatcgacccactaagactgttggaac |
244 |
Q |
| |
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| ||||||||||||| |||||||||||||||||||| |
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| T |
7731331 |
gaaaagtggggatcggcccactaagactgttggaac |
7731366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 181
Target Start/End: Original strand, 7713454 - 7713626
Alignment:
| Q |
9 |
aggagcagcacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgtta |
108 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||| || ||||||||||| || || |
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| T |
7713454 |
aggagcatcacaaaggcatttattatgctcaaacgaactctttgcaaacttgctcaacccagtagggatcgcaccacagagctggttaaagctaacattg |
7713553 |
T |
|
| Q |
109 |
aactgggaaagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaa |
181 |
Q |
| |
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||||| ||||||||| ||||| | ||| |||||||||||| |||||| |||||| ||||| |||||||||| |
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| T |
7713554 |
aactgcgaaagagactgtaggttgtcgagcgacgccggaatagcaccggataacttgttgttggacaaatcaa |
7713626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 7699109 - 7699344
Alignment:
| Q |
9 |
aggagcagcacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgtta |
108 |
Q |
| |
|
||||||| |||| |||||||||||||| |||||| | |||| |||||| |||||||||| ||| || |||||||| || ||||||||||| || ||| |
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| T |
7699109 |
aggagcaccacaaaggcatttattatgctcaaacacattcttgttaaacttcttcaacccagcaggaattgcaccacagagctggttaaagctaacatta |
7699208 |
T |
|
| Q |
109 |
aactgggaaagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggccta |
208 |
Q |
| |
|
||||| |||||||| ||||| ||||| ||||||||||||| |||| |||||| |||||||||||||||| ||||| || || |||||| | ||||| |
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| T |
7699209 |
aactgcgaaagagattgtaggttgccgagtgacgccggaatagtgccggataacttgttgttagacaaatcaacctcctttaggcgcttcaacttgccta |
7699308 |
T |
|
| Q |
209 |
ggaaagtggggatcgacccactaagactgttggaac |
244 |
Q |
| |
|
| || | |||||| | ||||||||| |||||||||| |
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| T |
7699309 |
gaaaggaggggattggcccactaaggctgttggaac |
7699344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 12908357 - 12908132
Alignment:
| Q |
17 |
cacagaggcatttattatgatcaaacgaactctttgcaaacttgttcaacccagtaggtatcgcaccacacagttggttaaagctgacgttaaactggga |
116 |
Q |
| |
|
|||| |||||||||||||| |||||| |||||| | ||||| ||||||||||||||||||||||||||||| |||||| |||| || || |||||||| |
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| T |
12908357 |
cacaaaggcatttattatgctcaaacatactcttctccaacttcttcaacccagtaggtatcgcaccacacagatggttagagctaacattcaactggga |
12908258 |
T |
|
| Q |
117 |
aagagacggtagggagccgaatgacgccggaataacaccggttaacttattgttagacaaatcaaactcctgtaagcccttcaattggcctaggaaagtg |
216 |
Q |
| |
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||||||||||||| | ||| ||||| ||||||||||||| |||||| |||||||||||||||| ||| | ||||| |||||| |||||||||| ||| |
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| T |
12908257 |
gagagacggtagggtggcgagcgacgctggaataacaccggataacttgttgttagacaaatcaacctcttctaagcgcttcaaccggcctaggaaggtg |
12908158 |
T |
|
| Q |
217 |
gggatcgacccactaagactgttgga |
242 |
Q |
| |
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||||||| |||||||| ||||||| |
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|
| T |
12908157 |
gggatcgggccactaaggttgttgga |
12908132 |
T |
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