View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_21 (Length: 251)
Name: NF4011_low_21
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_21 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 47863939 - 47864168
Alignment:
| Q |
1 |
ttaattgagcaatcaaaaccgattgcttgcaagtaagtttggacagttaaatcaaaaccgattactatggcaggtgtaatataagatggttcagtcttaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47863939 |
ttaattgagcaatcaaaaccgattgcttgcaagtaagtttggacagttaaatcaaaaccgattactatggcaggtgtaatataagatggttcagtcttaa |
47864038 |
T |
|
| Q |
101 |
atataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagttttttcttagaaactgcagattaa |
200 |
Q |
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| T |
47864039 |
atataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagttttttct-----actgcagattaa |
47864133 |
T |
|
| Q |
201 |
ttttttaagttgaagattgtcatcttcgactttgt |
235 |
Q |
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| T |
47864134 |
ttttttaagttgaagattgtcatcttcgactttgt |
47864168 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 153; Significance: 3e-81; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 71 - 235
Target Start/End: Complemental strand, 19470448 - 19470284
Alignment:
| Q |
71 |
caggtgtaatataagatggttcagtcttaaatataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtt |
170 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
19470448 |
caggtgtaatataagatggttcagtcttaaatataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctcaaaagttgcagct |
19470349 |
T |
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| Q |
171 |
tatagttttttcttagaaactgcagattaattttttaagttgaagattgtcatcttcgactttgt |
235 |
Q |
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| T |
19470348 |
tatagttttttcttagaaactgcagattaattttttaagttgaagattgtcatcttcgaatttgt |
19470284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19470585 - 19470530
Alignment:
| Q |
1 |
ttaattgagcaatcaaaaccgattgcttgcaagtaagtttggacagttaaatcaaa |
56 |
Q |
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| T |
19470585 |
ttaattgagcaatcaaaaccgattgcttgcaagtaagtttggacagttaaatcaaa |
19470530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 2239704 - 2239856
Alignment:
| Q |
88 |
ggttcagtcttaaatataatgaaaagagt---aatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagtttttt--- |
181 |
Q |
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|||||| |||||||||||||||||| ||| ||||||| | |||| | |||||||||||||| ||||||||||||| | | | ||| |||||||| |
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| T |
2239704 |
ggttcaatcttaaatataatgaaaatagttataatgactcaatcttacaatgttcctattgatcgcagagctgaaaaatgacggattagagttttttttg |
2239803 |
T |
|
| Q |
182 |
cttagaaactgcagattaattttttaagttgaagattgtcatcttcgactttgtt |
236 |
Q |
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|| ||||| |||||||||| ||||||||||||| || ||||||||||||||| |
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| T |
2239804 |
ctgagaaattgcagattaa--agttaagttgaagatcgttatcttcgactttgtt |
2239856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 236
Target Start/End: Original strand, 32381974 - 32382127
Alignment:
| Q |
88 |
ggttcagtcttaaatataatgaaaagagtaat---gactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagtttttt--- |
181 |
Q |
| |
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|||||| |||||||||||||||||||||| || |||| |||||| | |||||||||||||| ||||||||||||| | | | ||| |||||||| |
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| T |
32381974 |
ggttcaatcttaaatataatgaaaagagttattatgactcagtcttacaatgttcctattgatcgcagagctgaaaaatgacggattaaagttttttttt |
32382073 |
T |
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| Q |
182 |
-cttagaaactgcagattaattttttaagttgaagattgtcatcttcgactttgtt |
236 |
Q |
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|| |||| |||||||||| |||||||||||||||| ||||||||||||||| |
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| T |
32382074 |
gctgcgaaattgcagattaa--agttaagttgaagattgttatcttcgactttgtt |
32382127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 88 - 181
Target Start/End: Complemental strand, 20790655 - 20790562
Alignment:
| Q |
88 |
ggttcagtcttaaatataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagtttttt |
181 |
Q |
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||||||||||| |||||||||| | |||| | | | |||||| | ||||||||||| || ||||||||||||| |||||| ||| |||||||| |
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| T |
20790655 |
ggttcagtcttgaatataatgagatgagttttaagtcagtcttacaatgttcctatttatcgcagagctgaaaaattgcagcttaaagtttttt |
20790562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 7121 - 6964
Alignment:
| Q |
88 |
ggttcagtcttaaatataatgaaaagagtaatgactgagtcttcctatgttcctattgatagcagagctgaaaagttgcagtttatagttttttctt--- |
184 |
Q |
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|||||| ||||||||| ||||| |||||| ||| | |||||| | ||||| |||||||| ||||||||||| |||||| ||| ||||||| || |
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| T |
7121 |
ggttcaatcttaaatacaatgagaagagttttgaatcagtcttacgatgtttctattgatcaaagagctgaaaaattgcagcttaaagtttttgtttttg |
7022 |
T |
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| Q |
185 |
-----agaaactgcagattaattttttaagttgaagattgtcatcttcgactttgttg |
237 |
Q |
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||||| |||| ||||| |||||||||||||||||| |||||| ||||||||| |
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| T |
7021 |
ttttgagaaattgcatattaaagttttaagttgaagattgttatcttcaactttgttg |
6964 |
T |
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