View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_22 (Length: 238)
Name: NF4011_low_22
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_22 |
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| [»] scaffold0440 (1 HSPs) |
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Alignment Details
Target: scaffold0440 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0440
Description:
Target: scaffold0440; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 34 - 221
Target Start/End: Original strand, 13535 - 13722
Alignment:
| Q |
34 |
attcctttagcataaataaaccaatgttacattcaaaaagtactctccaaactcaacaaataaaagacttgattatgttggtgcaattgtgttctagact |
133 |
Q |
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| T |
13535 |
attcctttagcataaataaaccaatgttacattcaaaaagtactctccaaactcaacaaataaaagacttgattatgttggtgcaattgtgttctagact |
13634 |
T |
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| Q |
134 |
ctaatatcattgaataccaatgtttacaaaatactaacatcaagtccattgnnnnnnnccttcaacacacattttcactaaaaataaa |
221 |
Q |
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| T |
13635 |
ctaatatcattgaataccaatgtttacaaaatactaacatcaagtccattgtttttttccttcaacacacattttcactaaaaataaa |
13722 |
T |
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Target: chr6 (Bit Score: 72; Significance: 7e-33; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 52 - 166
Target Start/End: Complemental strand, 22310436 - 22310321
Alignment:
| Q |
52 |
aaccaatgttacattcaaaaagtactctccaaa-ctcaacaaataaaagacttgattatgttggtgcaattgtgttctagactctaatatcattgaatac |
150 |
Q |
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||||||||||||||||| ||| ||||||||||| ||||||||||| | |||| |||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
22310436 |
aaccaatgttacattcataaattactctccaaaactcaacaaatatcaaacttcattatgttggtgcaattgtgttctagcttctaatatcattaaatac |
22310337 |
T |
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| Q |
151 |
caatgtttacaaaata |
166 |
Q |
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| T |
22310336 |
caatgtttacaaaata |
22310321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 22310491 - 22310441
Alignment:
| Q |
34 |
attcctttagcataaataaaccaatgttacattcaaaaagtactctccaaa |
84 |
Q |
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||||||||||||||| | ||||||||||||||||| ||| ||||||||||| |
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| T |
22310491 |
attcctttagcataactcaaccaatgttacattcataaattactctccaaa |
22310441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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