View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_6 (Length: 474)
Name: NF4011_low_6
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 6e-75; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 72 - 262
Target Start/End: Original strand, 24966982 - 24967172
Alignment:
| Q |
72 |
cacttgattctagtatacaccaaaatcgatatctttttctatatgcaattaagtgcagtagaaaagtggatagatgaacacaatagtggtcgtctgttct |
171 |
Q |
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| T |
24966982 |
cacttgattctagtatacaccaaagctgatatctttttctgtatgcaattaaatgcaatagaaaagtggatagatgagcacaatagtggccgtcttttct |
24967081 |
T |
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| Q |
172 |
ctagtaattaaataaaagtataattatctaaaataaatgtaacaaaccaactatatatttggtgagtgtttggattgaaggagagtttgat |
262 |
Q |
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| T |
24967082 |
ctagtaattaaataacaatataattatctaaaataaatataacaaaccaactatatatttggtgagtgtttggattgaaggagagtttgat |
24967172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 271 - 409
Target Start/End: Original strand, 24967231 - 24967369
Alignment:
| Q |
271 |
attttgatgaaaactacattgaagggtttctttgttatattttttcacatcatttctttataaaagaatcatttttagttctttccgacactgtttttaa |
370 |
Q |
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| T |
24967231 |
attttgacgaaaactacattgaagggtttctttgttatattttttcacatcatttctttataaaagaatcatttttagttctttccgacactgtttgtaa |
24967330 |
T |
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| Q |
371 |
cataataaagaaaattaaagaaaaatcctctcaaattta |
409 |
Q |
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| T |
24967331 |
cataataaagaaaattaaagaaaaatcctctcaaattta |
24967369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 26131578 - 26131643
Alignment:
| Q |
82 |
tagtatacaccaaaatcgatatctttttctatatgcaattaagtgcagtagaaaagtggatagatg |
147 |
Q |
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| T |
26131578 |
tagtatatacgaaaatcgaaaactttttctatatacaattaagcacagtagaaaagtggatagatg |
26131643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 52
Target Start/End: Original strand, 24966923 - 24966963
Alignment:
| Q |
13 |
aatatgatgggtcataaggg-atccaaatatcatcatattt |
52 |
Q |
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| T |
24966923 |
aatatgatgggtcataaggggatccaaatatcatcatattt |
24966963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 423 - 454
Target Start/End: Original strand, 24967384 - 24967415
Alignment:
| Q |
423 |
aaaatggatcaaatgagaacctatttttagta |
454 |
Q |
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| T |
24967384 |
aaaatggatcaaatgagaacctatttttagta |
24967415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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