View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_7 (Length: 469)
Name: NF4011_low_7
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 5 - 450
Target Start/End: Complemental strand, 36445563 - 36445118
Alignment:
| Q |
5 |
cacggtggaggtggtcacggtggacacggtggaggaggccacggtggtcacggtgtcgagcaaactgaggacaaaactcaaaactgatcataatgatatc |
104 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445563 |
cacggtggaggtggacacggaggacacggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatc |
36445464 |
T |
|
| Q |
105 |
taccttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactat |
204 |
Q |
| |
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|| ||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445463 |
tatcttcatgcaccatgcactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactat |
36445364 |
T |
|
| Q |
205 |
atagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36445363 |
atagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgt |
36445264 |
T |
|
| Q |
305 |
gttatcttgtcttattacctctctttttaaatttatggatgagatttctataattcactggtnnnnnnntacatagcataaaacttttttaatcaggacc |
404 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36445263 |
gttatcttgtcttattacctctctttttaaatttatggatgagatttctataattcactggtaaaaaaatacatagcataaaacttttttaatcaggacc |
36445164 |
T |
|
| Q |
405 |
gttccaacacatattgatgctcaatgcgaaatttaaaatgaagcat |
450 |
Q |
| |
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|||||||||||||||||||||||| ||||||| ||||||| ||||| |
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|
| T |
36445163 |
gttccaacacatattgatgctcaacgcgaaatctaaaatggagcat |
36445118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 32 - 464
Target Start/End: Complemental strand, 36468005 - 36467572
Alignment:
| Q |
32 |
ggtggaggaggccacggtggtcacggtgtcgagcaaactgaggacaaaactcaaaactgatcataatgatatctaccttcatgcatcatgcattctctct |
131 |
Q |
| |
|
|||||||| || |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||| |
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|
| T |
36468005 |
ggtggaggtggacacggtagtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatctatcttcatgcaccatgcactctttct |
36467906 |
T |
|
| Q |
132 |
cagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagatatttcttcggga |
231 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36467905 |
cagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactatatagtatagatagatatttcttcggga |
36467806 |
T |
|
| Q |
232 |
gaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatcttgtcttattacctctctttt |
331 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36467805 |
gaaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgttatcttgtcttattacctctctttt |
36467706 |
T |
|
| Q |
332 |
taaatttatggatgagatttctataattcactggt-nnnnnnntacatagcataaaacttttttaatcaggaccgttccaacacatattgatgctcaatg |
430 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
36467705 |
taaatttatggatgagatttctataattcactggtaaaaaaaatacatagcataaaacttttttaatcaggaccgttccaacacatattgatgctcaacg |
36467606 |
T |
|
| Q |
431 |
cgaaatttaaaatgaagcattttaagttattact |
464 |
Q |
| |
|
|||||| |||| |||||||||||||||||||||| |
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|
| T |
36467605 |
cgaaatctaaattgaagcattttaagttattact |
36467572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 5 - 357
Target Start/End: Complemental strand, 36435663 - 36435299
Alignment:
| Q |
5 |
cacggtggaggtggtcacggtggacacggtggaggaggccacggtggtcacggtgtcgagcaaactgaggacaaaactcaaaactgatcataatgatatc |
104 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36435663 |
cacggtggaggtggacacgggggacatggtggaggtggtcacggtggtcacggtgccgagcaaactgaggacaaaactcaaaactgatcataatgatatc |
36435564 |
T |
|
| Q |
105 |
taccttcatgcatcatgcattctctctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactat |
204 |
Q |
| |
|
|| ||||||||| |||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36435563 |
tatcttcatgcaccatgtactctttctcagtaatatatttcatgaataaaaataatgttgtgtgttgatataatggtgtatttatctatcttgccactat |
36435464 |
T |
|
| Q |
205 |
atagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaatgatga----taagcttttcc-aaaaaatgatg |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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|
| T |
36435463 |
atagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgtatttgtaacgatgattattaagcttttccaaaaaaatgatg |
36435364 |
T |
|
| Q |
300 |
aatgtgttatcttgt-------cttattacctctctttttaaatttatggatgagatttctataa |
357 |
Q |
| |
|
|||| ||||| ||| || ||||||||| ||||||||||| |||||| |||||||||| |
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|
| T |
36435363 |
aatgcgttataatgtgtattccgttcttacctctccttttaaatttacggatgatatttctataa |
36435299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 44 - 164
Target Start/End: Complemental strand, 36411260 - 36411144
Alignment:
| Q |
44 |
cacggtggtcacggtgtcgagcaaactgaggacaaaactcaaaactgatcataatgatatctaccttcatgcatcatgcattctctctcagtaatatatt |
143 |
Q |
| |
|
||||||||||| |||| || | ||||||||||| |||||| ||||| ||| |||||||||| ||||||| ||| || ||| ||| ||||||||||| |
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|
| T |
36411260 |
cacggtggtcatggtgccgtggaaactgaggacgaaactcgaaactaatcgtaatgatatca----tcatgcaccatacactctttcttagtaatatatt |
36411165 |
T |
|
| Q |
144 |
tcatgaataaaaataatgttg |
164 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
36411164 |
tcatgaataaaaataatgttg |
36411144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 240 - 294
Target Start/End: Complemental strand, 36411067 - 36411013
Alignment:
| Q |
240 |
gtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaa |
294 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36411067 |
gtataaatttgcataagactatgtatttgtaacgatgataagcttttccaaaaaa |
36411013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 297
Target Start/End: Complemental strand, 36475716 - 36475606
Alignment:
| Q |
186 |
ttatctatcttgccactatatagtatagatagatatttcttcgggagaaatcatgtataaatttgcatcagactatgta-tttgtaatgatgataagctt |
284 |
Q |
| |
|
|||||||||||| |||||||| ||| | ||||||||||| | | ||||||||||||||||||||| || ||||||| ||||| | |||||| ||| | |
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|
| T |
36475716 |
ttatctatcttgtcactatat-gta-atatagatatttcattagtggaaatcatgtataaatttgcaacaatctatgtattttgtgacgatgatgagcgt |
36475619 |
T |
|
| Q |
285 |
ttccaaaaaatga |
297 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36475618 |
ttccaaaaaatga |
36475606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 36492631 - 36492558
Alignment:
| Q |
233 |
aaatcatgtataaatttgcatcagactatgtatttgtaatgatgataagcttttccaaaaaatgatgaatgtgt |
306 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||| ||| ||| ||||||| ||| || || ||||||||| |
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|
| T |
36492631 |
aaatcatgtataaatttgcatcaatctatgtatctgtgatggggatgagcttttgcaagaagtggtgaatgtgt |
36492558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 408 - 462
Target Start/End: Complemental strand, 54315942 - 54315888
Alignment:
| Q |
408 |
ccaacacatattgatgctcaatgcgaaatttaaaatgaagcattttaagttatta |
462 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| || ||||||||||||| |
|
|
| T |
54315942 |
ccaacacatattgatgctcaaggcgaaatctaaaatgaggccttttaagttatta |
54315888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 408 - 462
Target Start/End: Original strand, 33670073 - 33670127
Alignment:
| Q |
408 |
ccaacacatattgatgctcaatgcgaaatttaaaatgaagcattttaagttatta |
462 |
Q |
| |
|
||||||||||| || |||||| ||||||| |||||||| || ||||||||||||| |
|
|
| T |
33670073 |
ccaacacatatcgaggctcaaggcgaaatctaaaatgaggccttttaagttatta |
33670127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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