View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4011_low_9 (Length: 404)
Name: NF4011_low_9
Description: NF4011
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4011_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Complemental strand, 41433641 - 41433262
Alignment:
| Q |
9 |
aacacagatactactgatactaattgtggtaaactagcttattcagaggtatcaacatggcaaaatggtacagattgttactcatggcttggtgtttgtt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
41433641 |
aacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacagattgttgctcatggcttggtgtttgtt |
41433542 |
T |
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| Q |
109 |
acctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatggccttcaaggtatgattcatcccaacagtacactttttcatctttctc |
208 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41433541 |
acctgtgacacagtttctggtcacgtaattggcttagacctcagctgcaatggccttcaaggtatgattcatcccaacagtacactttttcatctttctc |
41433442 |
T |
|
| Q |
209 |
atctccaaacactcaacctttctcataatagattattcccaactcaactttcatcccaatttggtgcttttgtcaatcttacacacctcgacttgtctga |
308 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41433441 |
atctccaaacactcaaccttgctcataatagattattcccaactcaactttcatcccaatttggtgcttttgtcaatcttacacacctcgacttgtctga |
41433342 |
T |
|
| Q |
309 |
taccgagattcaaggtgaagtttcttcctatatctcacacctttctaaattggtgtcacttgatctctccatgaatgacg |
388 |
Q |
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| T |
41433341 |
taccaagattcaaggtgaagtttcttcctatatctcacacctttctaaattggtgtcacttgatctctccatgaatgacg |
41433262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 387
Target Start/End: Complemental strand, 41446361 - 41445987
Alignment:
| Q |
9 |
aacacagatactactgatactaattgtggtaaactagcttattcagaggtatcaacatggcaaaatggtacagattgttactcatggcttggtgtttgtt |
108 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
41446361 |
aacatagatactactgatactaattgtggtaaactagcttatgcagaggtatcaacatggcaaaatggtacagattgttgctcatggcttggtgtc---- |
41446266 |
T |
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| Q |
109 |
acctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatggccttcaaggtatgattcatcccaacagtacactttttcatctttctc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
41446265 |
acctgtgacacaatttctggtcacgtaattggcttagacctcagctgcaatgaccttcaaggtattattcatcccaacagtacactttttcatctttctc |
41446166 |
T |
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| Q |
209 |
atctccaaacactcaacctttctcataatagattattcccaactcaactttcatcccaatttggtgcttttgtcaatcttacacacctcgacttgtctga |
308 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||| |||||||||| |
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| T |
41446165 |
atctccaaacactcaaccttgctcataatagattattcccaactcaactttcatctcagtttggtgcttttgtcaatctcacacacctcaacttgtctga |
41446066 |
T |
|
| Q |
309 |
taccgagattcaaggtgaagtttcttcctatatctcacacctttctaaattggtgtcacttgatctctccatgaatgac |
387 |
Q |
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| T |
41446065 |
taccgagattcaaggtgaagtttcttcctgtatctcacacctttctaacttagtgtcacttgatctctccatgaatgac |
41445987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 161 - 233
Target Start/End: Original strand, 41570027 - 41570099
Alignment:
| Q |
161 |
gccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctttctca |
233 |
Q |
| |
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|||||||||||| ||| |||| |||| || |||||||||||| ||||||||||| |||||||||||||||| |
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| T |
41570027 |
gccttcaaggtaaaatttatcctaacaacactctttttcatcttgctcatctccaatcactcaacctttctca |
41570099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 158 - 231
Target Start/End: Original strand, 41711794 - 41711867
Alignment:
| Q |
158 |
atggccttcaaggtatgattcatcccaacagtacactttttcatctttctcatctccaaacactcaacctttct |
231 |
Q |
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| T |
41711794 |
atggccttcaaggtatattccatcctaataatactcttttccatcttgttcatctccaaacactcaacctttct |
41711867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 42130791 - 42130747
Alignment:
| Q |
187 |
agtacactttttcatctttctcatctccaaacactcaacctttct |
231 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||| |
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| T |
42130791 |
agtaccctttttcatcttgttcatctccaaacactcaacctttct |
42130747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 187 - 231
Target Start/End: Complemental strand, 12250387 - 12250343
Alignment:
| Q |
187 |
agtacactttttcatctttctcatctccaaacactcaacctttct |
231 |
Q |
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| T |
12250387 |
agtacccttttcgatcttgctcatctccaaacactcaacctttct |
12250343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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