View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_1 (Length: 874)

Name: NF4012_high_1
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_1
NF4012_high_1
[»] chr7 (3 HSPs)
chr7 (157-752)||(19576996-19577591)
chr7 (13-88)||(19577656-19577731)
chr7 (813-855)||(19576887-19576929)


Alignment Details
Target: chr7 (Bit Score: 572; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 572; E-Value: 0
Query Start/End: Original strand, 157 - 752
Target Start/End: Complemental strand, 19577591 - 19576996
Alignment:
Q  157 ttcattcattcaattctcaaccccttttttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattctacaccaaactccgtcaatc 256  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||    
T  19577591 ttcattcattcaattctcaaccccttctttcttcactcaattatcacactatggttcgtgaacacagagtcgattcattttacacaaaactccgtcagtc 19577492  T
Q  257 cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa 356  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577491 cgcccaactttcttccaccacatcccccgtcctcattttcccctcaacctccgacgtcgattccctctgcgcactcaaaacccttttccgtattctcgaa 19577392  T
Q  357 tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg 456  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577391 tccgattcaattcaatacgcatcttaccccgtttcatccttccgcgaaattcataattatgctaaacccaccccccaaaacattaaccacacctccattg 19577292  T
Q  457 ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct 556  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577291 ttttaatcaactggggctctcataaagatcttcgcaaaatacttaacttaggtccttatgctactatcttcgttatcgatagtcaccgtccgattcatct 19577192  T
Q  557 tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcctcttact 656  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577191 tcataatctcagtgaccagaatgattctgttgttgttctttttactcaagaagatgaaaaacaagcggatctcgcttatgattttgattttcctcttact 19577092  T
Q  657 gctcttgctaatgcttcaactactattgattccgagtctgagtctgatgactctgactccgaatctgattcggattcagattcatctgaatccggt 752  Q
    |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577091 gctcttgctaatgcttcaaccactattgattcggagtctgagtctgatgactctgactccgaatctgattcggattcagattcatctgaatccggt 19576996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 19577731 - 19577656
Alignment:
Q  13 aaaatcataacaataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc 88  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19577731 aaaatcacaacaataccgccaaattttcacgccgcgcctcctcaaattttcaaattcccccatcttcataactctc 19577656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 813 - 855
Target Start/End: Complemental strand, 19576929 - 19576887
Alignment:
Q  813 cgtcaagatccggtgaaaatgtataggaagaagaagaaagagt 855  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  19576929 cgtcaagatccggtgaaaatgtataggaagaagaagaaagagt 19576887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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