View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF4012_high_14 (Length: 453)
Name: NF4012_high_14
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 10 - 425
Target Start/End: Original strand, 49653305 - 49653720
Alignment:
| Q |
10 |
attatactactttggtacccatcttggcttgtttcctttgttttcttggcattttcctcatctcactttcattttgatttcaagtttccaattccctctc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653305 |
attatactactttggtacccatcttggcttgtttcctttgttttcttggcattttcctcttctcactttcattttgatttcaagtttccaattccctctc |
49653404 |
T |
|
| Q |
110 |
actctcccaaccacttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacaccctattgtcaaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653405 |
actctcccaaccacttctctctaatggatgctacctcacaacctttgaagtatcaggtaacatgttacttcaacccaacaatcacaccctattgtcaaaa |
49653504 |
T |
|
| Q |
210 |
tctttctttgttttttattttgtaagctaaagttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653505 |
tctttctttgttttttattttgtaagctaaacttggttttgtttcacagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagta |
49653604 |
T |
|
| Q |
310 |
aagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagatt |
409 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49653605 |
aagaaagttcttcagagcattgatggtactgagcttataaatcaaactaacttaagttttcaactattcagttctttttcatttcatgcatggaaagatt |
49653704 |
T |
|
| Q |
410 |
acaagtcttaaatctt |
425 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49653705 |
acaagtcttaaatctt |
49653720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 14382151 - 14382068
Alignment:
| Q |
256 |
cagacatggttcttgaaggtttctatccactgtgaaggttgtaggaggaaagtaaagaaagttcttcagagcattgatggtact |
339 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| || | |||||||||||||||| | || |||||||||||||| |
|
|
| T |
14382151 |
cagacatggttcttgaaagtttctatccactgtgaaggttgcagaaagaaagtaaagaaagttttaaagcgcattgatggtact |
14382068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University