View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_15 (Length: 444)
Name: NF4012_high_15
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 86 - 235
Target Start/End: Original strand, 14718528 - 14718677
Alignment:
| Q |
86 |
aagaattatcaaaactctgaagcctctagagccaaaaacaaaaatacattgctgacatgaaatatatggggttgattgattcaacgtttgaaaaatcgaa |
185 |
Q |
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| T |
14718528 |
aagaattatcaaaactctgaagcctctacagccaaaaacaaaa-tacaaaactgacatgaaatatatggggttgtttgattcaatgtttcaaaaattgaa |
14718626 |
T |
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| Q |
186 |
ccaaatggttcaattgattaacc-tgaactggagctctctatggttcagtt |
235 |
Q |
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| T |
14718627 |
ccaaatggttcaattgattaaccatgaactggaactctctatggttcagtt |
14718677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 287 - 396
Target Start/End: Original strand, 14718911 - 14719016
Alignment:
| Q |
287 |
aaaagctgaaaaacagattttatgaagtgaatcgatcgatcagtcctctggggatcaaacagatcctatattatttataagaaagttatgttcaagcttt |
386 |
Q |
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|||| ||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14718911 |
aaaaactgaaaaacagatttgatgaagtgaatcgatcg----gccctctgggaatcaaacagatcctatattatttataagaaagttatgttcaagcttt |
14719006 |
T |
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| Q |
387 |
aaaggatttg |
396 |
Q |
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| T |
14719007 |
aaaggatttg |
14719016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 22 - 90
Target Start/End: Original strand, 14718352 - 14718420
Alignment:
| Q |
22 |
aaagaaaagaaaggaaaaacttgacgagcaaaagaactggcttcgtttaaaggactaatatattaagaa |
90 |
Q |
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| T |
14718352 |
aaagaaaagaaaggaaaaacttgacgaacaacagaactggcttcgtttaaaggactaatatattaagaa |
14718420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 22 - 90
Target Start/End: Complemental strand, 10943262 - 10943194
Alignment:
| Q |
22 |
aaagaaaagaaaggaaaaacttgacgagcaaaagaactggcttcgtttaaaggactaatatattaagaa |
90 |
Q |
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| T |
10943262 |
aaagaaaagaaaggaaaaaccggacgagcaacagaattggcttcgtttaaaggactaatatattaagaa |
10943194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 10942839 - 10942787
Alignment:
| Q |
342 |
caaacagatcctatattatttataagaaagttatgttcaagctttaaaggatt |
394 |
Q |
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| T |
10942839 |
caaacaggccctatagtatttctaagaaagttatgtgcaagctttaaaggatt |
10942787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Complemental strand, 10943086 - 10943043
Alignment:
| Q |
86 |
aagaattatcaaaactctgaagcctctagagccaaaaacaaaaa |
129 |
Q |
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||||||||||||||||||||| |||||| || |||||||||||| |
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| T |
10943086 |
aagaattatcaaaactctgaaacctctacaggcaaaaacaaaaa |
10943043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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