View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_16 (Length: 420)

Name: NF4012_high_16
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_16
NF4012_high_16
[»] chr4 (18 HSPs)
chr4 (228-410)||(36627530-36627712)
chr4 (46-390)||(35968717-35969061)
chr4 (28-367)||(36636305-36636644)
chr4 (103-370)||(36910013-36910280)
chr4 (44-370)||(18364604-18364930)
chr4 (44-370)||(36597995-36598321)
chr4 (103-367)||(36629780-36630035)
chr4 (44-241)||(36665397-36665594)
chr4 (44-241)||(36643120-36643317)
chr4 (125-387)||(36612711-36612973)
chr4 (220-377)||(20211229-20211386)
chr4 (251-372)||(36642956-36643077)
chr4 (98-242)||(55966534-55966678)
chr4 (132-378)||(29676969-29677216)
chr4 (267-370)||(38862637-38862742)
chr4 (201-378)||(28125361-28125537)
chr4 (327-377)||(55966197-55966247)
chr4 (328-365)||(36665240-36665277)
[»] chr1 (1 HSPs)
chr1 (48-372)||(42602242-42602564)
[»] chr6 (4 HSPs)
chr6 (96-303)||(10812471-10812678)
chr6 (98-236)||(33839786-33839924)
chr6 (96-243)||(10812022-10812169)
chr6 (102-162)||(33843840-33843900)
[»] chr8 (1 HSPs)
chr8 (251-372)||(35336356-35336477)
[»] chr3 (1 HSPs)
chr3 (103-173)||(25597368-25597438)
[»] chr2 (1 HSPs)
chr2 (123-174)||(38989588-38989639)
[»] chr5 (2 HSPs)
chr5 (48-174)||(19657894-19658020)
chr5 (125-174)||(19674733-19674782)


Alignment Details
Target: chr4 (Bit Score: 175; Significance: 4e-94; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 228 - 410
Target Start/End: Complemental strand, 36627712 - 36627530
Alignment:
Q  228 gccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcata 327  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  36627712 gccaatttagctatgcgtggtatttcatcaaactttttcaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtataccttttcata 36627613  T
Q  328 aaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtattcaatcggggataaagctcctatg 410  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36627612 aaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtattcaatcggggataaagctcctatg 36627530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 46 - 390
Target Start/End: Original strand, 35968717 - 35969061
Alignment:
Q  46 tatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccac 145  Q
    |||||||||  | ||||||||| || | |||||||| |||  |||| ||||||||| ||||||| |||| | ||| ||| |||||||| ||||||||| |    
T  35968717 tatttccaaaatatttgaatttgccagcattgaccagcttggatctaacaaatttcgccttttggggtgataaaaacggctgtgttgaccccttttccgc 35968816  T
Q  146 ctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgt 245  Q
    |||||| |||||||||||||||||| ||   |||||| || || ||||||||||||||||||| |||||| |||||||||||| | |||||||||||| |    
T  35968817 ctttactaagttgaatagtttggtcctttacggttgtaagatagaggatgctcaaatcctcaagatatcaagtgagacacttgtcgatttagctatgcat 35968916  T
Q  246 ggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtc 345  Q
      || |||||| || |||||| |||| ||| | | |||||| |||||||| |||||||   |||||||||  |||  ||| |||||||||||||||||||    
T  35968917 cataattcatctaatttttcccaaattgagttgtctactcctagtctttgcacctttactattaccggtattcctaatcagaaaatatgtgggagcggtc 35969016  T
Q  346 tttcttctgttaaacaagtaaatattgctgcagtaatgtattcaa 390  Q
    ||||||||||||||||||||||||||| ||||  |||| ||||||    
T  35969017 tttcttctgttaaacaagtaaatattgatgcaaaaatgcattcaa 35969061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 28 - 367
Target Start/End: Complemental strand, 36636644 - 36636305
Alignment:
Q  28 gtagtaattctagaatattatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttg 127  Q
    ||||||||||| |||||||||||||||  ||||||||||| ||   ||| |||||||||||||| |||||||||| |||||| ||||||||||  |||||    
T  36636644 gtagtaattctggaatattatttccaaaatctttgaatttgccaacattaaccaacttatatctaacaaatttcaacttttgcggtggtgaaaatggttg 36636545  T
Q  128 tgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacactt 227  Q
    || |||||||||||   ||||| ||||||||| ||||||||||||| || |||||  | ||| |||||| ||||||||||  |||||| |||| || |||    
T  36636544 tgctgagccctttttggcctttcccaagttgactagtttggtcattcgtagttgtagggtaagggatgcacaaatcctcaggatatcaagtgaaaccctt 36636445  T
Q  228 gccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcata 327  Q
    | ||||||    ||||||  |  ||||  | ||||| | ||||| ||| ||| | |||||||||||||||||||||  ||||| ||||  ||| |||| |    
T  36636444 gtcaattttaaaatgcgtaattattcagaagactttgcaaaaattgagttatgtgctccaagtctttgtacctttacttttactggtactcctgttcaga 36636345  T
Q  328 aaatatgtgggagcggtctttcttctgttaaacaagtaaa 367  Q
    ||||||||||||| |||||||||||||| |||||||||||    
T  36636344 aaatatgtgggagtggtctttcttctgtcaaacaagtaaa 36636305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 103 - 370
Target Start/End: Original strand, 36910013 - 36910280
Alignment:
Q  103 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 202  Q
    ||||||| ||| |||||| |||||||| ||||||||||| | ||||||||||||||||||||||||||||| || | |||||| ||||||||||||||||    
T  36910013 ccttttgcggtagtgaaaacggttgtgctgagccctttttcgcctttaccaagttgaatagtttggtcattagtagctgtgaggtaaaggatgctcaaat 36910112  T
Q  203 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 302  Q
    ||||||||||||| |||||||||||| |||||||||  |||  | || || |    |||||  |||| || || ||| | ||||||||||||||||||||    
T  36910113 cctcaacatatcaagtgagacacttgtcaatttagccctgcacgataatttacttgactttgtcaaattcaagttatctgctccaagtctttgtaccttt 36910212  T
Q  303 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatat 370  Q
    |  ||||||||| |||||| |||| ||||||| ||||||| |||| |||||| ||||||||||||||||    
T  36910213 acttttaccggt-gaccttcttcagaaaatatatgggagcagtctctcttctattaaacaagtaaatat 36910280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 44 - 370
Target Start/End: Original strand, 18364604 - 18364930
Alignment:
Q  44 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 143  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  18364604 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 18364703  T
Q  144 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 243  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  18364704 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 18364803  T
Q  244 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 343  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  18364804 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 18364903  T
Q  344 tctttcttctgttaaacaagtaaatat 370  Q
    ||||| |||||||||| || |||||||    
T  18364904 tcttttttctgttaaaaaaataaatat 18364930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 44 - 370
Target Start/End: Complemental strand, 36598321 - 36597995
Alignment:
Q  44 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 143  Q
    |||||||||||  ||||||||||| ||   ||||||||||||| ||||  || ||||  ||||||| |||||||||| |||||||| |||||||||||||    
T  36598321 attatttccaaaatctttgaatttgcctttattgaccaacttagatctatcacatttttccttttgcggtggtgaaaacggttgtgctgagcccttttcc 36598222  T
Q  144 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 243  Q
     ||||| ||||||||||||||||||| |||  ||||||| || |||| ||||||||||| |||| ||||||| |||||||||||| |||||| || ||||    
T  36598221 gcctttcccaagttgaatagtttggttatttctggttgtaaggtaaaagatgctcaaattctcagcatatcaagtgagacacttgtcaattttgcgatgc 36598122  T
Q  244 gtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcgg 343  Q
     |  |  ||| ||||   || ||||||||||| ||| |  ||| ||||||||||||||||  ||| ||||||  | | |||| ||||||||||||||| |    
T  36598121 attattgttcttcaagaattgccaaaatcgagttatctgttcctagtctttgtacctttactttttccggtatgcttgttcagaaaatatgtgggagcag 36598022  T
Q  344 tctttcttctgttaaacaagtaaatat 370  Q
    ||||| |||||||||| || |||||||    
T  36598021 tcttttttctgttaaaaaaataaatat 36597995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 103 - 367
Target Start/End: Original strand, 36629780 - 36630035
Alignment:
Q  103 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaat 202  Q
    ||||||| || ||||||| |||||||| |||||||||||| |||||||| ||||||||||||||| || || || |||||||| ||||||||||||||||    
T  36629780 ccttttgcggcggtgaaaacggttgtgctgagcccttttcgacctttacaaagttgaatagtttgatccttcgtagttgtgaggtaaaggatgctcaaat 36629879  T
Q  203 cctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtaccttt 302  Q
    ||||| ||||||| ||||||| |||| ||| |||||  ||| || |         |||||| ||||||| ||||||| |  ||||||||||||||||||     
T  36629880 cctcagcatatcaagtgagacccttgtcaagttagcattgcttgat---------aactttgccaaaattgagctatctgttccaagtctttgtaccttc 36629970  T
Q  303 aagtttaccggtagacctt-ttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaa 367  Q
    |  ||||||||| |||||| |||| ||||| ||||||||| |||| |||||| |||||||||||||    
T  36629971 acttttaccggt-gaccttattcagaaaatttgtgggagcagtctctcttctattaaacaagtaaa 36630035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 36665594 - 36665397
Alignment:
Q  44 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 143  Q
    |||||||||||  || |||||||| ||   |||||||| |||| || | ||||||||| |||| || |||||||||| |||||||| |||||||||||||    
T  36665594 attatttccaaattcgttgaatttgcctttattgaccagcttagatataacaaatttcgccttctgcggtggtgaaagcggttgtgctgagcccttttcc 36665495  T
Q  144 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 241  Q
      |||||||| |||||||||||||| | || || ||||| || ||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||    
T  36665494 gtctttaccatgttgaatagtttggcccttagtagttgtaaggtaaaggatgctcaaatcctcaccatatcaagtgatacacttgccaatttagctat 36665397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 44 - 241
Target Start/End: Complemental strand, 36643317 - 36643120
Alignment:
Q  44 attatttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttcc 143  Q
    |||||||||||  ||||||||||| ||    |||||||||||| || |  |||||||   |||||| |||||||||| |||||||| ||| |||||||      
T  36643317 attatttccaaaatctttgaatttgcctttgttgaccaacttagatttagcaaatttagtcttttgcggtggtgaaagcggttgtgctgatccctttttg 36643218  T
Q  144 acctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctat 241  Q
     ||||| | |||||||||||||||| |||| || ||||| || ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36643217 gcctttccaaagttgaatagtttgggcattcgttgttgtaagataaaggatgctcaaatcctcaacatatcaagtgagacacttgtcaatttagctat 36643120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 125 - 387
Target Start/End: Complemental strand, 36612973 - 36612711
Alignment:
Q  125 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagaca 224  Q
    ||||||||| |||| |||| |||||||||||||||||||||||||||||| | | ||||   | | |||||| |||| |||||  |||||| | ||||||    
T  36612973 ttgtgttgaaccctcttccgcctttaccaagttgaatagtttggtcattgatagatgtgcaattagggatgcacaaaccctcaggatatcaagcgagaca 36612874  T
Q  225 cttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttc 324  Q
    || |  ||||||||||||| ||  | |||||   |||||  ||||||  || |||||||||  ||||||||||||||||  | |||||||   |||  ||    
T  36612873 ctagtaaatttagctatgcatgaaagttcatatgactttgacaaaattcagttatttactcagagtctttgtacctttacttataccggtcatcctgatc 36612774  T
Q  325 ataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcagtaatgtatt 387  Q
    | | |||||||||||| ||||||||||||||||||| ||||||||||||||||| ||| ||||    
T  36612773 agagaatatgtgggagtggtctttcttctgttaaactagtaaatattgctgcagaaatatatt 36612711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 220 - 377
Target Start/End: Complemental strand, 20211386 - 20211229
Alignment:
Q  220 agacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagacc 319  Q
    ||||||||| || ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||||||||||  ||||||||||  ||    
T  20211386 agacacttgtcattttagctatgcataatgattcatccgactttgccaaaattgagttatctggtccgagtctttgtacctttacttttaccggtattcc 20211287  T
Q  320 ttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgca 377  Q
    |  ||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||    
T  20211286 tgatcagaaaatatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgca 20211229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 251 - 372
Target Start/End: Complemental strand, 36643077 - 36642956
Alignment:
Q  251 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttct 350  Q
    |||||| || ||| ||||||| ||||||| |||||||||||||||||| ||||  ||||  ||||| | | |||| |||||||| |||||||| |||||     
T  36643077 ttcatccaaatttgccaaaatagagctatctactccaagtctttgtacatttacttttattggtagtcttattcaaaaaatatgcgggagcggactttcc 36642978  T
Q  351 tctgttaaacaagtaaatattg 372  Q
    ||||||||||||||||||||||    
T  36642977 tctgttaaacaagtaaatattg 36642956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 98 - 242
Target Start/End: Complemental strand, 55966678 - 55966534
Alignment:
Q  98 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 197  Q
    ||||| ||| || |||| ||||| |||||||| |||||||||||    |||||||||||||| ||||||||||||| ||| ||||||| ||| ||||||     
T  55966678 tttcatcttctgcggtgatgaaaacggttgtgctgagccctttttgggctttaccaagttgagtagtttggtcattcgtgtttgtgaggtaagggatgca 55966579  T
Q  198 caaatcctcaacatatcatgtgagacacttgccaatttagctatg 242  Q
    ||||| ||||  |||||| || ||||||| | |||||||| ||||    
T  55966578 caaattctcaggatatcaagttagacactaggcaatttagatatg 55966534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 132 - 378
Target Start/End: Original strand, 29676969 - 29677216
Alignment:
Q  132 gagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgcca 231  Q
    |||||||||||  |||||  || ||||||||||||||   || ||| ||||  | | |||||||| |  ||||| ||||||||| | |||||||||| ||    
T  29676969 gagcccttttcggcctttggcaggttgaatagtttggcagttcgtgattgtacggttaaggatgcacggatcctaaacatatcaagcgagacacttgtca 29677068  T
Q  232 atttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactcca-agtctttgtacctttaagtttaccggtagaccttttcataaaa 330  Q
    |||||| || || | |||  |||||  ||||| | ||||| ||| ||| ||||||  |||||||||||| |||  || || ||||| |||  |||  |||    
T  29677069 atttagatacgcatagtaagtcatccgactttgcaaaaattgagttatctactcctgagtctttgtacccttactttcactggtagtcctgatcagcaaa 29677168  T
Q  331 tatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcag 378  Q
    ||||||| ||||||||||||||||| ||||| ||||||||||||||||    
T  29677169 tatgtggaagcggtctttcttctgtgaaacatgtaaatattgctgcag 29677216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 267 - 370
Target Start/End: Complemental strand, 38862742 - 38862637
Alignment:
Q  267 aaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtg--ggagcggtctttcttctgttaaacaagt 364  Q
    ||||| ||||||| |||||||||||| ||||||||||  |||| |||||| |||  ||||| ||||||||  |||| ||||||||||||||||||| |||    
T  38862742 aaaattgagctatctactccaagtctatgtacctttacttttagcggtagtcctaatcatataatatgtgtgggagtggtctttcttctgttaaacgagt 38862643  T
Q  365 aaatat 370  Q
    ||||||    
T  38862642 aaatat 38862637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 201 - 378
Target Start/End: Original strand, 28125361 - 28125537
Alignment:
Q  201 atcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacct 300  Q
    ||||| ||||||||| | |||||||||| |  ||||||||||| |  |  ||||||  ||||| ||||||| ||| ||| |  ||| ||||||||| |||    
T  28125361 atcctaaacatatcaagcgagacacttgtcgttttagctatgcataatgattcatccgactttgccaaaattgag-tatctggtccgagtctttgttcct 28125459  T
Q  301 ttaagtttaccggtagaccttttcataaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgcag 378  Q
    |||  ||||||||||  |||  ||| ||||||||||| ||| ||||||||||||| ||||| ||||||||||||||||    
T  28125460 ttacttttaccggtattcctgatcagaaaatatgtggaagcagtctttcttctgtgaaacatgtaaatattgctgcag 28125537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 377
Target Start/End: Complemental strand, 55966247 - 55966197
Alignment:
Q  327 aaaatatgtgggagcggtctttcttctgttaaacaagtaaatattgctgca 377  Q
    |||||||||||||| | ||||||||||||||||||||||||||||| ||||    
T  55966247 aaaatatgtgggagtgctctttcttctgttaaacaagtaaatattggtgca 55966197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 328 - 365
Target Start/End: Complemental strand, 36665277 - 36665240
Alignment:
Q  328 aaatatgtgggagcggtctttcttctgttaaacaagta 365  Q
    |||||||||||||||| |||||||||||||||||||||    
T  36665277 aaatatgtgggagcggactttcttctgttaaacaagta 36665240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 48 - 372
Target Start/End: Complemental strand, 42602564 - 42602242
Alignment:
Q  48 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 147  Q
    |||||||  ||||||||||| |||| |||||||| |||  |||||||||||||  ||||||| |||| |||||  ||| ||| ||| |||||||  ||||    
T  42602564 tttccaaaatctttgaatttgccggcattgaccagcttggatctcacaaattttgccttttgcggtgatgaaaatggtcgtgctgaaccctttttgacct 42602465  T
Q  148 ttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtgg 247  Q
    |||||| ||||||||||||||||||| |  |||||  | |||| ||||| ||||||||||  |||||| |||||||||||| |||||||||||||| |      
T  42602464 ttaccaggttgaatagtttggtcattagcagttgtacggtaaaagatgcacaaatcctcaggatatcaagtgagacacttgtcaatttagctatgcataa 42602365  T
Q  248 tatttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttttcataaaatatgtgggagcggtctt 347  Q
    |||||||||   |||| ||||||||||| ||| | ||||||| |||||| | ||||   | | ||| || | |  ||| |||||||||||||||||||      
T  42602364 tatttcatcttcctttaccaaaatcgagttatctgctccaagcctttgtgcatttactatcaacggcagtcttgatcagaaaatatgtgggagcggtc-- 42602267  T
Q  348 tcttctgttaaacaagtaaatattg 372  Q
    |||||||||||||| ||||||||||    
T  42602266 tcttctgttaaacatgtaaatattg 42602242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 96 - 303
Target Start/End: Original strand, 10812471 - 10812678
Alignment:
Q  96 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 195  Q
    |||||||||||||  |||||||||| ||  | |||||||||||| ||  |||||||||| ||||| |||||| |||||  ||||||| || ||| |||      
T  10812471 aatttcaccttttacggtggtgaaaacgactatgttgagcccttctcggcctttaccaaattgaagagtttgatcattcatggttgtaagataatggaca 10812570  T
Q  196 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgcgtggtatttcatcaaacttttccaaaatcgagctatttactccaagtctttg 295  Q
    | |||||| ||||||||||| ||||||||||||  ||||| ||||||  |  || |||||| ||  || ||||||| |||||||  |||||||  |||||    
T  10812571 cacaaatcatcaacatatcaagtgagacacttgtaaattttgctatggattatagttcatctaaaattgccaaaattgagctatccactccaaacctttg 10812670  T
Q  296 taccttta 303  Q
    ||| ||||    
T  10812671 tacgttta 10812678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 33839924 - 33839786
Alignment:
Q  98 tttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatgct 197  Q
    ||||||||| || |||| ||||| | |||||| ||||||||||||  ||||||||||||||||||| ||| ||||| || |||||  | | ||||||||     
T  33839924 tttcaccttctgcggtgatgaaaaccgttgtgctgagcccttttcagcctttaccaagttgaatagcttgatcattagtcgttgtatggttaaggatgca 33839825  T
Q  198 caaatcctcaacatatcatgtgagacacttgccaattta 236  Q
    |||||||||   |||||| |||||||||| | |||||||    
T  33839824 caaatcctccggatatcaagtgagacactagacaattta 33839786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 10812169 - 10812022
Alignment:
Q  96 aatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattggtggttgtgagctaaaggatg 195  Q
    ||||| |||||||  |||||||||| ||| | ||  |||||||| ||  |||||||||| ||||| |||||| ||||| |||||||| || ||| |||      
T  10812169 aatttgaccttttacggtggtgaaaacggctatgcagagcccttctcggcctttaccaaattgaagagtttgatcattcgtggttgtaaggtaatggaca 10812070  T
Q  196 ctcaaatcctcaacatatcatgtgagacacttgccaatttagctatgc 243  Q
    | |||||| ||||||||||| ||||||||||||  ||||| |||||||    
T  10812069 cacaaatcatcaacatatcaagtgagacacttgttaattttgctatgc 10812022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 33843900 - 33843840
Alignment:
Q  102 accttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaata 162  Q
    ||||| || |||| |||||  ||||||| ||||||||||||  ||||||||||||||||||    
T  33843900 accttctgcggtgatgaaaatggttgtgctgagcccttttctgcctttaccaagttgaata 33843840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 251 - 372
Target Start/End: Original strand, 35336356 - 35336477
Alignment:
Q  251 ttcatcaaacttttccaaaatcgagctatttactccaagtctttgtacctttaagtttaccggtagaccttt-tcataaaatatgtgggagcggtctttc 349  Q
    |||||| |||||| |||||||| |||| |  ||||||| ||||||||| ||||  ||| || | | |||||  ||| |||||||||||||||||||||||    
T  35336356 ttcatctaactttgccaaaatctagctttcaactccaaatctttgtacatttacttttcccagaa-accttgatcagaaaatatgtgggagcggtctttc 35336454  T
Q  350 ttctgttaaacaagtaaatattg 372  Q
    |||||||||||||||||| ||||    
T  35336455 ttctgttaaacaagtaaacattg 35336477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 173
Target Start/End: Original strand, 25597368 - 25597438
Alignment:
Q  103 ccttttgtggtggtgaaatcggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcatt 173  Q
    ||||||| |||| ||||| | |||||||||||||||||| | ||||||  | |||||||||||||||||||    
T  25597368 ccttttgcggtgatgaaagcagttgtgttgagccctttttcgcctttaaaatgttgaatagtttggtcatt 25597438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 123 - 174
Target Start/End: Original strand, 38989588 - 38989639
Alignment:
Q  123 ggttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 174  Q
    ||||||||||||||||||||||| ||||  | ||||||||||||| ||||||    
T  38989588 ggttgtgttgagcccttttccacatttaaaatgttgaatagtttgatcattg 38989639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 19658020 - 19657894
Alignment:
Q  48 tttccaatgtctttgaatttaccggaattgaccaacttatatctcacaaatttcaccttttgtggtggtgaaatcggttgtgttgagcccttttccacct 147  Q
    |||||||  ||||||||||| ||   ||||||||||||| |||| | | | || | |||| || | ||||||| |  ||||| |||||| |||| |  ||    
T  19658020 tttccaaaatctttgaatttgccatcattgaccaacttaaatctaaaagaatttatctttagttgcggtgaaaacaattgtgctgagccttttttcggct 19657921  T
Q  148 ttaccaagttgaatagtttggtcattg 174  Q
    |||||||||||||||||||||||||||    
T  19657920 ttaccaagttgaatagtttggtcattg 19657894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 174
Target Start/End: Complemental strand, 19674782 - 19674733
Alignment:
Q  125 ttgtgttgagcccttttccacctttaccaagttgaatagtttggtcattg 174  Q
    ||||| |||||| |||| |  |||||||||||||||||||||||||||||    
T  19674782 ttgtgctgagccttttttcggctttaccaagttgaatagtttggtcattg 19674733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University