View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_17 (Length: 420)
Name: NF4012_high_17
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 127 - 400
Target Start/End: Complemental strand, 8462009 - 8461736
Alignment:
| Q |
127 |
ccattctagtttgattgataccaccaaaatgaatagaagattttattgcgtttataatctgactagaacaaacatcttatctagaaaaaatagctttatg |
226 |
Q |
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| T |
8462009 |
ccattctattttgattgataccaccaaaatgaatagaagatttcattgcgtttataatctgactagaacaaacatcatatctagaaaaaatagcttcatg |
8461910 |
T |
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| Q |
227 |
agcctccaggctagatagcttacctttgtagtataccataaagtcattagcataaaaacaatgagaaggcacctgcacatatctaaagcctctataagat |
326 |
Q |
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| T |
8461909 |
agcctccaggctagatagcttacctttgtagtataccataaagtcattagcataaaaacaatgagaaggcacctgcacatatctaaagcctctataagat |
8461810 |
T |
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| Q |
327 |
caattttaccttcatccacaagccttgacattcctctactgagaactttttatgccaaacagaaaaaggagagg |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8461809 |
caattttaccttcatccacaagccttgacattcctctactgagaactttttatgccaaacagaaaaaggagagg |
8461736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 129
Target Start/End: Complemental strand, 8462075 - 8462041
Alignment:
| Q |
95 |
ttcaaggcaagtatagccgtaaaggtaaagaacca |
129 |
Q |
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| T |
8462075 |
ttcaaggcaagtaaagccgtaaaggtaaagaacca |
8462041 |
T |
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