View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_18 (Length: 407)

Name: NF4012_high_18
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_18
NF4012_high_18
[»] chr1 (7 HSPs)
chr1 (264-389)||(958702-958827)
chr1 (17-128)||(958452-958564)
chr1 (263-307)||(7121238-7121282)
chr1 (263-307)||(32133706-32133750)
chr1 (263-307)||(35738834-35738878)
chr1 (263-307)||(39026979-39027023)
chr1 (263-307)||(50100047-50100091)
[»] chr5 (5 HSPs)
chr5 (263-307)||(3049597-3049641)
chr5 (263-307)||(14645889-14645933)
chr5 (263-307)||(30775045-30775089)
chr5 (263-307)||(32302628-32302672)
chr5 (263-307)||(35853761-35853805)
[»] chr4 (1 HSPs)
chr4 (263-307)||(52014027-52014071)
[»] scaffold0242 (2 HSPs)
scaffold0242 (263-307)||(12910-12954)
scaffold0242 (263-307)||(21745-21789)
[»] chr7 (4 HSPs)
chr7 (263-307)||(12499431-12499475)
chr7 (263-307)||(26299627-26299671)
chr7 (263-307)||(34152217-34152261)
chr7 (263-307)||(34174863-34174907)
[»] chr6 (2 HSPs)
chr6 (263-307)||(6799259-6799303)
chr6 (263-307)||(9061966-9062010)
[»] chr3 (5 HSPs)
chr3 (263-307)||(30964384-30964428)
chr3 (263-307)||(30980196-30980240)
chr3 (263-307)||(36678936-36678980)
chr3 (263-307)||(38694671-38694715)
chr3 (263-307)||(43657491-43657535)
[»] chr2 (4 HSPs)
chr2 (263-307)||(2657032-2657076)
chr2 (263-307)||(11788847-11788891)
chr2 (263-307)||(35048857-35048901)
chr2 (263-307)||(42969260-42969304)


Alignment Details
Target: chr1 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 264 - 389
Target Start/End: Original strand, 958702 - 958827
Alignment:
Q  264 tttagtaacaatttattataactttatcatacaactacaactttctctatcccaccgttatttttccattgtacatcacttattatttattactctgtag 363  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||    
T  958702 tttagtaacaatttattataactttatcatgcaactacaactttctctatcccaccgttatttttccattgtacatcacttactatttattactctatag 958801  T
Q  364 tttttcaacttttctacttactcttt 389  Q
    ||||||||||||||||||||||||||    
T  958802 tttttcaacttttctacttactcttt 958827  T

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Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 958452 - 958564
Alignment:
Q  17 aatatccactataggtagagtaaaatcttgtattcatgatccgaggttaggtatggataataagccg-aaatttaaacggatatgtgcactatactaccc 115  Q
    |||||||||| |||||||||||||||| ||| |||||| |||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||    
T  958452 aatatccactttaggtagagtaaaatcatgttttcatggtccgaggttaggtatggataattagccgcaaatttgaacggatatgtgcactgtactaccc 958551  T
Q  116 aaccccacaaccc 128  Q
    |||||||||||||    
T  958552 aaccccacaaccc 958564  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 7121282 - 7121238
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  7121282 ctttagtaacaatttattatgattttaacatgcaactacaacttt 7121238  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 32133750 - 32133706
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  32133750 ctttagtaacaatttattatgattttaacatgcaactacaacttt 32133706  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 35738834 - 35738878
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35738834 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35738878  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 39027023 - 39026979
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  39027023 ctttagtaacaatttattatgattttaacatgcaactacaacttt 39026979  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 50100091 - 50100047
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| |||||| ||| |||||||| ||||    
T  50100091 ctttagtaacaatttattatgactttaacatgcaactacatcttt 50100047  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 3049597 - 3049641
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    ||||||||||||||||||| ||||||| ||| |||||||||||||    
T  3049597 ctttagtaacaatttattagaactttaacatgcaactacaacttt 3049641  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 14645933 - 14645889
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  14645933 ctttagtaacaatttattatgattttaacatgcaactacaacttt 14645889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 30775089 - 30775045
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30775089 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30775045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 32302672 - 32302628
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  32302672 ctttagtaacaatttattatgattttaacatgcaactacaacttt 32302628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 35853805 - 35853761
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35853805 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35853761  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 52014071 - 52014027
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| |||||| ||| |||||||||||||    
T  52014071 ctttagtaacaatttattatgactttaacatgcaactacaacttt 52014027  T

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Target: scaffold0242 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 12910 - 12954
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  12910 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 12954  T

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Target: scaffold0242; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 21745 - 21789
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  21745 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 21789  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 12499431 - 12499475
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  12499431 ctttagtaacaatttattatgattttaacatgcaactacaacttt 12499475  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 26299671 - 26299627
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  26299671 ctttagtaacaatttattatgattttaacatgcaactacaacttt 26299627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 34152217 - 34152261
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  34152217 ctttagtaacaatttattatgattttaacatgcaactacaacttt 34152261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 34174907 - 34174863
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  34174907 ctttagtaacaatttattatgattttaacatgcaactacaacttt 34174863  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 6799259 - 6799303
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  6799259 ctttagtaacaatttattatgattttaacatgcaactacaacttt 6799303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 9061966 - 9062010
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  9061966 ctttagtaacaatttattatgattttaacatgcaactacaacttt 9062010  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30964384 - 30964428
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30964384 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30964428  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 30980196 - 30980240
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  30980196 ctttagtaacaatttattatgattttaacatgcaactacaacttt 30980240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 36678936 - 36678980
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||| ||| | |||| |||||||||||||||||    
T  36678936 ctttagtaacaatttagtatgattttaacatacaactacaacttt 36678980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Original strand, 38694671 - 38694715
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  38694671 ctttagtaacaatttattatgattttaacatgcaactacaacttt 38694715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 43657535 - 43657491
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  43657535 ctttagtaacaatttattatgattttaacatgcaactacaacttt 43657491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 2657076 - 2657032
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| |||||| ||| ||||| |||||||    
T  2657076 ctttagtaacaatttattatgactttaacatgcaactgcaacttt 2657032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 11788891 - 11788847
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  11788891 ctttagtaacaatttattatgattttaacatgcaactacaacttt 11788847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 35048901 - 35048857
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  35048901 ctttagtaacaatttattatgattttaacatgcaactacaacttt 35048857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 263 - 307
Target Start/End: Complemental strand, 42969304 - 42969260
Alignment:
Q  263 ctttagtaacaatttattataactttatcatacaactacaacttt 307  Q
    |||||||||||||||||||| | |||| ||| |||||||||||||    
T  42969304 ctttagtaacaatttattatgattttaacatgcaactacaacttt 42969260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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