View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_24 (Length: 372)

Name: NF4012_high_24
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_24
NF4012_high_24
[»] chr4 (4 HSPs)
chr4 (10-354)||(9446478-9446822)
chr4 (163-203)||(1815890-1815930)
chr4 (167-203)||(17683487-17683523)
chr4 (167-203)||(22819795-22819831)
[»] chr2 (11 HSPs)
chr2 (305-356)||(29271840-29271891)
chr2 (260-304)||(29271917-29271961)
chr2 (164-203)||(3012741-3012780)
chr2 (164-203)||(23352796-23352835)
chr2 (167-197)||(2563850-2563880)
chr2 (167-197)||(9634331-9634361)
chr2 (167-197)||(16677819-16677849)
chr2 (163-203)||(2221135-2221175)
chr2 (167-203)||(6170776-6170812)
chr2 (167-203)||(13765546-13765582)
chr2 (167-203)||(24562906-24562942)
[»] chr3 (8 HSPs)
chr3 (164-203)||(41281610-41281649)
chr3 (164-203)||(6999313-6999352)
chr3 (170-203)||(3953364-3953397)
chr3 (166-203)||(49761452-49761489)
chr3 (167-195)||(46139701-46139729)
chr3 (167-203)||(46852021-46852057)
chr3 (167-203)||(51465803-51465839)
chr3 (167-203)||(55400145-55400181)
[»] chr1 (15 HSPs)
chr1 (164-203)||(48220033-48220072)
chr1 (163-203)||(33358047-33358087)
chr1 (164-203)||(29154921-29154960)
chr1 (170-203)||(35136993-35137026)
chr1 (164-197)||(43769762-43769795)
chr1 (169-197)||(6143831-6143859)
chr1 (163-203)||(8447878-8447918)
chr1 (167-203)||(34254240-34254276)
chr1 (167-203)||(36577301-36577337)
chr1 (167-203)||(40316833-40316869)
chr1 (165-197)||(41507089-41507121)
chr1 (167-203)||(48326113-48326149)
chr1 (167-203)||(50328030-50328066)
chr1 (165-197)||(51436665-51436697)
chr1 (167-203)||(52362628-52362664)
[»] chr7 (6 HSPs)
chr7 (163-203)||(7817778-7817818)
chr7 (164-205)||(10055519-10055560)
chr7 (166-203)||(41458741-41458778)
chr7 (170-203)||(43573432-43573465)
chr7 (167-203)||(11352863-11352899)
chr7 (164-196)||(33180606-33180638)
[»] chr5 (11 HSPs)
chr5 (167-203)||(189592-189628)
chr5 (163-203)||(41175595-41175635)
chr5 (163-197)||(15008445-15008479)
chr5 (163-197)||(15952940-15952974)
chr5 (170-203)||(189523-189556)
chr5 (167-203)||(8675322-8675358)
chr5 (167-203)||(10649581-10649617)
chr5 (167-203)||(19481071-19481107)
chr5 (167-203)||(32912184-32912220)
chr5 (167-203)||(43213948-43213984)
chr5 (167-203)||(43441884-43441920)
[»] chr8 (4 HSPs)
chr8 (164-197)||(26000684-26000717)
chr8 (165-206)||(37597382-37597423)
chr8 (163-203)||(30439395-30439435)
chr8 (165-197)||(33958010-33958042)
[»] chr6 (5 HSPs)
chr6 (164-197)||(5028161-5028194)
chr6 (164-197)||(32046841-32046874)
chr6 (167-203)||(13143271-13143307)
chr6 (167-203)||(18141190-18141226)
chr6 (167-203)||(35213450-35213486)
[»] scaffold0532 (1 HSPs)
scaffold0532 (163-203)||(11106-11146)


Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 10 - 354
Target Start/End: Complemental strand, 9446822 - 9446478
Alignment:
Q  10 catcatcaaaacaaaattaaggggttattgttcttcacatcaacatggttcttacaaccaccgacgtatcaacaatactagcagaatcctcatgagtaag 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9446822 catcatcaaaacaaaattaaggggttattgttcttcacatcaacatggttcttacaaccaccgccgtatcaacaatactagcagaatcctcatgagtaag 9446723  T
Q  110 acaaaactgcaaaattgatagccaaatgcctcgtaagactcctttagatgtttacataagttgtcaaccaaatgattgttcaaataacgctcctttagat 209  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9446722 acaaaacttcaaaattgatagccaaatgcctcgtaagactcctttagatgtttacataagttgtcaaccaaataattgttcaaataacgctcctttagat 9446623  T
Q  210 gtttacatagtcgatgagaaagagagcgagggagacataagggggaatgagaaagcaagaagtgtccatatttacatttcgacttgataaattttaagat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9446622 gtttacatagtcgatgagaaagagagcgagggagacataagggggaatgagaaagcaagaagtgtccatatttacatttcgacttgataaattttaagat 9446523  T
Q  310 acgattatgacataactttttacatatgacaaccaattaatgatt 354  Q
    | |||||||||||||||||||||||||| ||||||||||||||||    
T  9446522 atgattatgacataactttttacatatggcaaccaattaatgatt 9446478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 1815930 - 1815890
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||| ||||||||||||| |||||    
T  1815930 acataagttgtcaaccagatggttgttcaaataacactcct 1815890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 17683487 - 17683523
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  17683487 aagttgtcaaccaaatggttgttcaaataacactcct 17683523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 22819795 - 22819831
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  22819795 aagttgtcaaccaaatggttgttcaaataacactcct 22819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 29271891 - 29271840
Alignment:
Q  305 aagatacgattatgacataactttttacatatgacaaccaattaatgattct 356  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||    
T  29271891 aagatacgattatgacataactttttacatatggcaaccaactaatgattct 29271840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 29271961 - 29271917
Alignment:
Q  260 gaaagcaagaagtgtccatatttacatttcgacttgataaatttt 304  Q
    ||||||||||||||||| |||||||||| ||| ||||||||||||    
T  29271961 gaaagcaagaagtgtccgtatttacattgcgatttgataaatttt 29271917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 3012780 - 3012741
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  3012780 cataagttgtcaaccaaatggttgttcaaataacactcct 3012741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 23352835 - 23352796
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  23352835 cataagttgtcaaccaaatggttgttcaaataacactcct 23352796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 2563850 - 2563880
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||||||||||||||    
T  2563850 aagttgtcaaccaaatgattgttcaaataac 2563880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Complemental strand, 9634361 - 9634331
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||||||||||||||    
T  9634361 aagttgtcaaccaaatgattgttcaaataac 9634331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 197
Target Start/End: Original strand, 16677819 - 16677849
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||||||||||||||    
T  16677819 aagttgtcaaccaaatgattgttcaaataac 16677849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 2221135 - 2221175
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||| |||| |||||||||||||| |||||    
T  2221135 acataagttgtcaacaaaattattgttcaaataacactcct 2221175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 6170776 - 6170812
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  6170776 aagttgtcaaccaaatggttgttcaaataacactcct 6170812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 13765546 - 13765582
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  13765546 aagttgtcaaccaaatggttgttcaaataacactcct 13765582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 24562942 - 24562906
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  24562942 aagttgtcaaccaaatggttgttcaaataacactcct 24562906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 41281649 - 41281610
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  41281649 cataagttgtcaaccaaatgattgttcaaataacactcct 41281610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 6999313 - 6999352
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  6999313 cataagttgtcaaccaaatggttgttcaaataacactcct 6999352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 3953397 - 3953364
Alignment:
Q  170 ttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  3953397 ttgtcaaccaaatgattgttcaaataacactcct 3953364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 49761452 - 49761489
Alignment:
Q  166 taagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||| ||||||||||||||||||| |||||    
T  49761452 taagttgtcaactaaatgattgttcaaataacactcct 49761489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 46139729 - 46139701
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaata 195  Q
    |||||||||||||||||||||||||||||    
T  46139729 aagttgtcaaccaaatgattgttcaaata 46139701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 46852057 - 46852021
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  46852057 aagttgtcaaccaaatggttgttcaaataacactcct 46852021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 51465839 - 51465803
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  51465839 aagttgtcaaccaaatggttgttcaaataacactcct 51465803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 55400145 - 55400181
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  55400145 aagttgtcaaccaaatggttgttcaaataacactcct 55400181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 164 - 203
Target Start/End: Complemental strand, 48220072 - 48220033
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  48220072 cataagttgtcaaccaaatgattgttcaaataacactcct 48220033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 33358087 - 33358047
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  33358087 acataagttgtcaaccaaatggttgttcaaataacactcct 33358047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 203
Target Start/End: Original strand, 29154921 - 29154960
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||| ||||||||||||| |||||    
T  29154921 cataagttgtcaaccaaatggttgttcaaataacactcct 29154960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 35136993 - 35137026
Alignment:
Q  170 ttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  35136993 ttgtcaaccaaatgattgttcaaataacactcct 35137026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 43769762 - 43769795
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataac 197  Q
    ||||||||||||||||||||||| ||||||||||    
T  43769762 cataagttgtcaaccaaatgattattcaaataac 43769795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 6143831 - 6143859
Alignment:
Q  169 gttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||||||||||||    
T  6143831 gttgtcaaccaaatgattgttcaaataac 6143859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 8447878 - 8447918
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||| ||||| ||||||||||||||||||| |||||    
T  8447878 acataagttatcaactaaatgattgttcaaataacactcct 8447918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 34254276 - 34254240
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  34254276 aagttatcaaccaaatgattgttcaaataacactcct 34254240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 36577337 - 36577301
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  36577337 aagttgtcaaccaaatggttgttcaaataacactcct 36577301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 40316869 - 40316833
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  40316869 aagttgtcaaccaaatggttgttcaaataacactcct 40316833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 41507121 - 41507089
Alignment:
Q  165 ataagttgtcaaccaaatgattgttcaaataac 197  Q
    ||||||||||||||||||| |||||||||||||    
T  41507121 ataagttgtcaaccaaatggttgttcaaataac 41507089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 48326113 - 48326149
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  48326113 aagttgtcaaccaaatggttgttcaaataacactcct 48326149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 50328066 - 50328030
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  50328066 aagttgtcaaccaaatggttgttcaaataacactcct 50328030  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 51436697 - 51436665
Alignment:
Q  165 ataagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||| ||||||||||||||    
T  51436697 ataagttgtcaaccaaattattgttcaaataac 51436665  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 52362628 - 52362664
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  52362628 aagttgtcaaccaaatggttgttcaaataacactcct 52362664  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 7817778 - 7817818
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  7817778 acataagttgtcaaccaaatggttgttcaaataacactcct 7817818  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 10055560 - 10055519
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataacgctccttt 205  Q
    |||||||||||||||||||| ||||| ||||||| |||||||    
T  10055560 cataagttgtcaaccaaatggttgtttaaataacactccttt 10055519  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 41458741 - 41458778
Alignment:
Q  166 taagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||| ||||||||||||| |||||    
T  41458741 taagttgtcaaccaaatggttgttcaaataacactcct 41458778  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 43573465 - 43573432
Alignment:
Q  170 ttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  43573465 ttgtcaaccaaatgattgttcaaataacactcct 43573432  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 11352899 - 11352863
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  11352899 aagttgtcaaccaaatggttgttcaaataacactcct 11352863  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 196
Target Start/End: Complemental strand, 33180638 - 33180606
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataa 196  Q
    |||||||||||||||||||| ||||||||||||    
T  33180638 cataagttgtcaaccaaatggttgttcaaataa 33180606  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 189628 - 189592
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||||||||||||||||| |||||    
T  189628 aagttgtcaaccaaatgattgttcaaataacactcct 189592  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 41175635 - 41175595
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  41175635 acataagttgtcaaccaaatggttgttcaaataacactcct 41175595  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 15008479 - 15008445
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||| ||||||||||||||    
T  15008479 acataagttgtcaaccaaataattgttcaaataac 15008445  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 197
Target Start/End: Complemental strand, 15952974 - 15952940
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataac 197  Q
    ||||||||||||||||||||| |||||||||||||    
T  15952974 acataagttgtcaaccaaatggttgttcaaataac 15952940  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 189556 - 189523
Alignment:
Q  170 ttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    |||||||||||||||||||||||||||| |||||    
T  189556 ttgtcaaccaaatgattgttcaaataacactcct 189523  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 8675358 - 8675322
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  8675358 aagttgtcaaccaaatggttgttcaaataacactcct 8675322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 10649581 - 10649617
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  10649581 aagttgtcaaccaaatggttgttcaaataacactcct 10649617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 19481107 - 19481071
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||| ||||||||||||||||||||||||| |||||    
T  19481107 aagttatcaaccaaatgattgttcaaataacactcct 19481071  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 32912184 - 32912220
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  32912184 aagttgtcaaccaaatggttgttcaaataacactcct 32912220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 43213984 - 43213948
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  43213984 aagttgtcaaccaaatggttgttcaaataacactcct 43213948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Original strand, 43441884 - 43441920
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  43441884 aagttgtcaaccaaatggttgttcaaataacactcct 43441920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 26000684 - 26000717
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||| |||||||||||||||||||||||||||    
T  26000684 cataagatgtcaaccaaatgattgttcaaataac 26000717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 165 - 206
Target Start/End: Original strand, 37597382 - 37597423
Alignment:
Q  165 ataagttgtcaaccaaatgattgttcaaataacgctccttta 206  Q
    ||||||||||||| | ||||||||||||||||| ||||||||    
T  37597382 ataagttgtcaactatatgattgttcaaataacactccttta 37597423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Complemental strand, 30439435 - 30439395
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||| ||||||||||| ||||||||||||| |||||    
T  30439435 acataagttatcaaccaaatggttgttcaaataacactcct 30439395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 165 - 197
Target Start/End: Complemental strand, 33958042 - 33958010
Alignment:
Q  165 ataagttgtcaaccaaatgattgttcaaataac 197  Q
    ||||||||||||||||| |||||||||||||||    
T  33958042 ataagttgtcaaccaaaggattgttcaaataac 33958010  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Complemental strand, 5028194 - 5028161
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||| |||||||||||||||||||||||||    
T  5028194 cataagttatcaaccaaatgattgttcaaataac 5028161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 197
Target Start/End: Original strand, 32046841 - 32046874
Alignment:
Q  164 cataagttgtcaaccaaatgattgttcaaataac 197  Q
    |||||||||||||||||||| |||||||||||||    
T  32046841 cataagttgtcaaccaaatggttgttcaaataac 32046874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 13143307 - 13143271
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  13143307 aagttgtcaaccaaatggttgttcaaataacactcct 13143271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 18141226 - 18141190
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  18141226 aagttgtcaaccaaatggttgttcaaataacactcct 18141190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 203
Target Start/End: Complemental strand, 35213486 - 35213450
Alignment:
Q  167 aagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  35213486 aagttgtcaaccaaatggttgttcaaataacactcct 35213450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 11106 - 11146
Alignment:
Q  163 acataagttgtcaaccaaatgattgttcaaataacgctcct 203  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  11106 acataagttgtcaaccaaaaggttgttcaaataacactcct 11146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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