View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_31 (Length: 338)
Name: NF4012_high_31
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_31 |
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Alignment Details
Target: chr6 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 5946090 - 5946426
Alignment:
| Q |
1 |
taagagtgcttcttgtgcattcatggctcctcgcaacactgcc------------tcttttggatcaatctagtttatattttgttcatcctggtgatgt |
88 |
Q |
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| T |
5946090 |
taagagtgcttcttgtgcattcatggctcctcgcaacactgccactttctgatcctcttttggatcaatctagtttatattttgttcatcctggtgatgt |
5946189 |
T |
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| Q |
89 |
accttcatcagttctattactcctactctcattggttccaattatcactattgggcacaatcttatgactcttctttaaaatttatctcttatccaacaa |
188 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5946190 |
accttcatcagttctattactcctactctcattggttccaattatccgtatagggcacaatcttatgactcttctttaaaatttatctcttatccaacaa |
5946289 |
T |
|
| Q |
189 |
tcaacatctgctacttcttcgattttagttggtcatttatcaacttgtaagcaaggtactagtttcacctattcctaatcttgtcataactttactctag |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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| T |
5946290 |
tcaacatctgctacttcttcgattttagttggtcatttatcaactcgtaagcaaggtactagtttcaccgattcctaatcttgtcataattttactctag |
5946389 |
T |
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| Q |
289 |
gctcttggatcatagattcaggagctagtaatcatct |
325 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
5946390 |
gctcttggatcatagattcaggagctagtaatcatct |
5946426 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 317
Target Start/End: Original strand, 2985425 - 2985503
Alignment:
| Q |
239 |
gcaaggtactagtttcacctattcctaatcttgtcataactttactctaggctcttggatcatagattcaggagctagt |
317 |
Q |
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| T |
2985425 |
gcaaggtactagtttcatttcttctttaacttgtcataattttactctaagttcttggatcatagattcaggagctagt |
2985503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 323
Target Start/End: Complemental strand, 22464770 - 22464686
Alignment:
| Q |
239 |
gcaaggtactagtttcacctattcctaatcttgtcataactttactctaggctcttggatcatagattcaggagctagtaatcat |
323 |
Q |
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||||||||||||||||| || ||||| | ||||||| || |||||||| | ||||||||| |||||||| | |||||| ||||| |
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| T |
22464770 |
gcaaggtactagtttcatctcttccttaacttgtcacaattttactctcagttcttggatcgtagattcatgtgctagtgatcat |
22464686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 268 - 328
Target Start/End: Complemental strand, 26362459 - 26362399
Alignment:
| Q |
268 |
cttgtcataactttactctaggctcttggatcatagattcaggagctagtaatcatctctg |
328 |
Q |
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|||||||||| |||||||| | ||||||||||||||||||||||| ||| ||||| |||| |
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| T |
26362459 |
cttgtcataattttactcttagttcttggatcatagattcaggagccagtgatcatatctg |
26362399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 268 - 323
Target Start/End: Complemental strand, 18502399 - 18502344
Alignment:
| Q |
268 |
cttgtcataactttactctaggctcttggatcatagattcaggagctagtaatcat |
323 |
Q |
| |
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|||||||||| |||||||| ||| ||||||||||||||||||||| ||| ||||| |
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| T |
18502399 |
cttgtcataattttactcttagctattggatcatagattcaggagccagtgatcat |
18502344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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