View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_34 (Length: 316)
Name: NF4012_high_34
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_34 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold1086 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 5 - 316
Target Start/End: Complemental strand, 30568867 - 30568557
Alignment:
| Q |
5 |
ggataaattatggtagcaataaaggtaacaaacatatagaatcaccttctgcaacatataaggaggttgatttcgacctccagatgtagtagctctagcc |
104 |
Q |
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| T |
30568867 |
ggataaattatggtagcaataaaggtaacaaacatatagaatcaccttctgcaacatataaggaggttgatttcgacctccagatgtagtagctctagcc |
30568768 |
T |
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| Q |
105 |
ccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattgaaatttggtacttcgttgatttgattggaattcgatatttcacgaagaa |
204 |
Q |
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| T |
30568767 |
ccatgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattgaaatttggtacttcgttgatttgattggaattcgatatttcacgaagaa |
30568668 |
T |
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| Q |
205 |
taatttgatatataaggtatccatcatcgctcgctggttataactttatcattgaagtttaatgttgacactgtaannnnnnnnnccatatattatttct |
304 |
Q |
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| T |
30568667 |
taatttgatatataaggtatccatcatcgctcgctggttataactttatcattgaagtttaatcttgacactgtaa-ttttttttccatatattatttct |
30568569 |
T |
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| Q |
305 |
atgataggtaaa |
316 |
Q |
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|||||||||||| |
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| T |
30568568 |
atgataggtaaa |
30568557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 276
Target Start/End: Complemental strand, 30572394 - 30572115
Alignment:
| Q |
6 |
gataaattatggtagcaataaaggtaacaaacatatagaatcaccttctgcaacatataaggaggttgatttcgacctccagatgtagtagctctagccc |
105 |
Q |
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| T |
30572394 |
gataaattatggtagcaataaaggtaacaaacatatagaatcaccttctgcagcatataaggaggttgatttcgacctccagatgtagtagctctagctc |
30572295 |
T |
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| Q |
106 |
catgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattgaa---------atttggtacttcgttgatttgattggaattcgatatttc |
196 |
Q |
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| T |
30572294 |
catgacaatcaaacaaatcccgtccaaggacatgcgattcaattcgattaaaattcgatatatttggtacttcgttgatttgattggaattcgatatttc |
30572195 |
T |
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| Q |
197 |
acgaagaataatttgatatataaggtatccatcatcgctcgctggttataactttatcattgaagtttaatgttgacact |
276 |
Q |
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| T |
30572194 |
acaaagaataatttgatatataaggtatccatcatcgctcgttggttataactttatcattgacgtttaatcttgacact |
30572115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 30545886 - 30545832
Alignment:
| Q |
158 |
atttggtacttcgttgatttgattggaattcgatatttcacgaagaataatttga |
212 |
Q |
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| T |
30545886 |
atttggtacttcgtcgatttgattaaaattcgatatttcatggagaataatttga |
30545832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1086 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1086
Description:
Target: scaffold1086; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 158 - 212
Target Start/End: Complemental strand, 1132 - 1078
Alignment:
| Q |
158 |
atttggtacttcgttgatttgattggaattcgatatttcacgaagaataatttga |
212 |
Q |
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|||||||||||||| ||||||||| |||||||||||||| | |||||||||||| |
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| T |
1132 |
atttggtacttcgtcgatttgattaaaattcgatatttcatggagaataatttga |
1078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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