View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_43 (Length: 255)
Name: NF4012_high_43
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_43 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 183782 - 184016
Alignment:
| Q |
1 |
tgtgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatattactatgatggagaggtcttcattttt |
100 |
Q |
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| T |
183782 |
tgtgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatattactatgatggagaagtcttcattttt |
183881 |
T |
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| Q |
101 |
actgtcattggaatttggaagggatgggaaactcccgtttagtctgagcttgaggggtcttcgacagaggagctgtattctattatttagtgtgtttcca |
200 |
Q |
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| T |
183882 |
actgtcattggaatttggaagggatgggaaactcccgtttagtctgagcttgaggggtcttcgacagaggagctgtattctattatttagtgtgtttcca |
183981 |
T |
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| Q |
201 |
gctaagtaatggttgtctaatttcagggatcgtat |
235 |
Q |
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| T |
183982 |
gctaagtaatggttgtctaatttcagggatcgtat |
184016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 151 - 235
Target Start/End: Original strand, 44628551 - 44628636
Alignment:
| Q |
151 |
tgaggggtcttcgacagaggagctgtattctattatttagtgtgt-ttccagctaagtaatggttgtctaatttcagggatcgtat |
235 |
Q |
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| T |
44628551 |
tgaggggcctttgacggaggagctgtattttgctatttagtatgtcttccagctaagtaatggttgtctaatttcagggatcgtat |
44628636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 3 - 74
Target Start/End: Original strand, 44607003 - 44607073
Alignment:
| Q |
3 |
tgagattcttaacattatgcttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatatt |
74 |
Q |
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| T |
44607003 |
tgagattcttaacattatgcttaacaggaaggaaccaagttttagc-agtatagttgttcatagttcatatt |
44607073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 231
Target Start/End: Original strand, 44607087 - 44607121
Alignment:
| Q |
197 |
tccagctaagtaatggttgtctaatttcagggatc |
231 |
Q |
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| T |
44607087 |
tccagctaagtaatggttgtctaatttcagggatc |
44607121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 44628487 - 44628539
Alignment:
| Q |
22 |
cttaacacgaaggaaccgaattataacaagtatagttgatcatagttcatatt |
74 |
Q |
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| T |
44628487 |
cttaacatgaaggaaccgagttatagcaagtatagttgttcatagctcatatt |
44628539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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