View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_46 (Length: 252)

Name: NF4012_high_46
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_46
NF4012_high_46
[»] chr2 (7 HSPs)
chr2 (1-252)||(17657120-17657371)
chr2 (1-184)||(17689905-17690088)
chr2 (1-58)||(17625502-17625559)
chr2 (1-58)||(17669889-17669946)
chr2 (168-252)||(17730607-17730687)
chr2 (168-238)||(17657041-17657107)
chr2 (168-238)||(17730528-17730594)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 17657371 - 17657120
Alignment:
Q  1 tatagatggaaagtcctgtttttgctgtaacatttagtgatgagcctaacttctaacttagtacttaagattgttcttaaaatcattaaaaattcacaac 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17657371 tatagatggaaagttctgtttttgctgtaacatttagtgatgagcctaacttctaacttagtacttaagattgttcttaaaatcattaaaaattcacaac 17657272  T
Q  101 cacagagattgaatatgcattgtacaatctaaaggataaataatatactcttaactaaaacttggtcttcttattcttctgatgattctgatgttgaaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  17657271 cacagagattgaatatgcattgtacaatctaaaggataaataatctactcttaactaaaacttggtcttcttattcttctgatgattctgattttgaaac 17657172  T
Q  201 gtatagttgaagtagaagggaggatcaaagaaaaacatgaaagtcagaagag 252  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17657171 gtatagttgaagtagaaggcaggatcaaagaaaaacatgaaagtcagaagag 17657120  T

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Target: chr2; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 17690088 - 17689905
Alignment:
Q  1 tatagatggaaagtcctgtttttgctgtaacatttagtgatgagcctaacttctaacttagtacttaagattgttcttaaaatcattaaaaattcacaac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17690088 tatagatggaaagtcctgtttttgctgtaacatttagtgatgagcctaacttttaacttagtacttaagattgttcttaaaatcattaaaaattcacaac 17689989  T
Q  101 cacagagattgaatatgcattgtacaatctaaaggataaataatatactcttaactaaaacttggtcttcttattcttctgatg 184  Q
    ||||||||||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  17689988 cacagagattgaacatgcattgtacaatctaaaggataaataatctactcttgactaaaacttggtcttcttattcttctgatg 17689905  T

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Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17625559 - 17625502
Alignment:
Q  1 tatagatggaaagtcctgtttttgctgtaacatttagtgatgagcctaacttctaact 58  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  17625559 tatagatggaaagtcctgtttttgctgtaacatttagcgatgagcctaacttgtaact 17625502  T

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Target: chr2; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 17669946 - 17669889
Alignment:
Q  1 tatagatggaaagtcctgtttttgctgtaacatttagtgatgagcctaacttctaact 58  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  17669946 tatagatggaaagtcctgtttttgctgtaacatttagcgatgagcctaacttgtaact 17669889  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 252
Target Start/End: Complemental strand, 17730687 - 17730607
Alignment:
Q  168 ttcttattcttctgatgattctgatgttgaaacgtatagttgaagtagaagggaggatcaaagaaaaacatgaaagtcagaagag 252  Q
    |||||||||||| ||||||||||| ||||||| | || || ||||||||    ||||||||||||||||||  ||||||||||||    
T  17730687 ttcttattcttccgatgattctgacgttgaaaaggattgtcgaagtaga----aggatcaaagaaaaacatcgaagtcagaagag 17730607  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 17657107 - 17657041
Alignment:
Q  168 ttcttattcttctgatgattctgatgttgaaacgtatagttgaagtagaagggaggatcaaagaaaaacat 238  Q
    |||||||||||| ||||||||||||||||||| | || || ||||||||    ||||||||||||||||||    
T  17657107 ttcttattcttccgatgattctgatgttgaaaaggatggtcgaagtaga----aggatcaaagaaaaacat 17657041  T

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Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 17730594 - 17730528
Alignment:
Q  168 ttcttattcttctgatgattctgatgttgaaacgtatagttgaagtagaagggaggatcaaagaaaaacat 238  Q
    |||||||||||| | ||||||||||||||||| | || || ||||||||    ||||||||||||||||||    
T  17730594 ttcttattcttccgttgattctgatgttgaaaaggatggtcgaagtaga----aggatcaaagaaaaacat 17730528  T

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