View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF4012_high_5 (Length: 586)
Name: NF4012_high_5
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF4012_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 19 - 578
Target Start/End: Complemental strand, 26794922 - 26794368
Alignment:
| Q |
19 |
cttcttgggagtttgttgctaaatcatcagtagcataagagagacagtactattttgaatcaataatagaccgagagagcttaattattgatttgtttga |
118 |
Q |
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| T |
26794922 |
cttcttgggagtttgttgctaaatcatcagtagcataagagagacagtg---ttttgaatcaataatagaccgagagagcttaattattggtttgtttga |
26794826 |
T |
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| Q |
119 |
aataccaataacttgattatatattatacattaattgctgtctattttttatctttatagtttgtgtgtagcatgcatgccctacatataggtttggtag |
218 |
Q |
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| T |
26794825 |
aataccaataacttgattatatattatacattaattgctgtctattttttatctttatagtttgtgtgtagcatgcatgccctacatataggtttggtag |
26794726 |
T |
|
| Q |
219 |
ttttgtctgctagttttgctttttagactgttatagtgatcatagtgtttcttcttgcttcgagttccatttaaattactaatttttctctaagtatcac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26794725 |
ttttgtctgctagttttgctttttagactgttatagtgatcatagtgtttcttcttgcttcgagttccatttaaattactaatttttctccaagtatcac |
26794626 |
T |
|
| Q |
319 |
ctacatgagaacttataatttctttcacaaaacttggttggctgttttgagtggagttttgtctcttatcatattttattatattcaaaactcaaatcga |
418 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26794625 |
ctacatgagaacttataatttctttcacaaaacttggttggctgttttgagtggagttttgtctcttatcatattttgttatattcaaaactcaaatcga |
26794526 |
T |
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| Q |
419 |
atgttagtaattagtttgtgacatgaagaaaacttgttagtatagtgatcaaactttgaacctcctacatgcataggtgtttagttggccggagatatct |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26794525 |
atgttagtaattagtttgtgacatgaagaaaacttgttagtatagtgatcaaactttgaa---cctacatgcataggtgtttagttggccggagatatct |
26794429 |
T |
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| Q |
519 |
ttggcaatgcgtgtgggaagttgctatcattgtttt-catgcttgcctcctatcctatgct |
578 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26794428 |
ttggcaatgcgtgtgggaagttgctatcattgttttccatgcttgcctcctatcctatgct |
26794368 |
T |
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