View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF4012_high_50 (Length: 238)

Name: NF4012_high_50
Description: NF4012
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF4012_high_50
NF4012_high_50
[»] chr4 (5 HSPs)
chr4 (63-223)||(2541363-2541525)
chr4 (144-224)||(7395279-7395359)
chr4 (147-222)||(22093481-22093556)
chr4 (19-63)||(2543372-2543417)
chr4 (85-118)||(647831-647864)
[»] chr7 (12 HSPs)
chr7 (143-224)||(26809172-26809253)
chr7 (78-137)||(9765361-9765422)
chr7 (63-137)||(23313806-23313883)
chr7 (63-135)||(3862500-3862575)
chr7 (85-133)||(36843565-36843615)
chr7 (85-118)||(6966732-6966765)
chr7 (62-118)||(11279077-11279134)
chr7 (85-118)||(17863722-17863755)
chr7 (85-118)||(17866981-17867014)
chr7 (85-118)||(23760236-23760269)
chr7 (62-118)||(46846913-46846970)
chr7 (63-118)||(294449-294505)
[»] chr6 (13 HSPs)
chr6 (143-215)||(20189867-20189939)
chr6 (143-215)||(22146052-22146124)
chr6 (143-224)||(16730976-16731057)
chr6 (85-137)||(15537847-15537901)
chr6 (85-137)||(19665292-19665346)
chr6 (63-118)||(32704858-32704914)
chr6 (85-137)||(1838037-1838091)
chr6 (85-137)||(15534652-15534706)
chr6 (63-138)||(20527767-20527845)
chr6 (85-118)||(13017817-13017850)
chr6 (85-118)||(14790203-14790236)
chr6 (85-118)||(14795231-14795264)
chr6 (63-136)||(16883241-16883317)
[»] chr2 (5 HSPs)
chr2 (143-212)||(11059410-11059479)
chr2 (143-211)||(13517919-13517987)
chr2 (85-137)||(32576313-32576367)
chr2 (85-119)||(40017561-40017595)
chr2 (85-118)||(31527974-31528007)
[»] chr5 (5 HSPs)
chr5 (143-211)||(28562795-28562863)
chr5 (143-211)||(28566363-28566431)
chr5 (140-222)||(42062548-42062627)
chr5 (63-118)||(11989422-11989478)
chr5 (85-118)||(34405433-34405466)
[»] chr3 (6 HSPs)
chr3 (143-211)||(2783736-2783804)
chr3 (143-222)||(35412227-35412303)
chr3 (140-222)||(18645108-18645187)
chr3 (85-137)||(13979054-13979108)
chr3 (85-118)||(11139196-11139229)
chr3 (85-118)||(22626940-22626973)
[»] scaffold0567 (1 HSPs)
scaffold0567 (63-137)||(6414-6491)
[»] chr8 (2 HSPs)
chr8 (63-137)||(12575904-12575981)
chr8 (63-137)||(13096594-13096671)
[»] chr1 (6 HSPs)
chr1 (85-137)||(1936191-1936245)
chr1 (85-137)||(16190804-16190858)
chr1 (63-118)||(13492847-13492903)
chr1 (65-137)||(34065908-34065983)
chr1 (85-118)||(10759706-10759739)
chr1 (63-119)||(13495571-13495628)
[»] scaffold0665 (1 HSPs)
scaffold0665 (85-118)||(272-305)


Alignment Details
Target: chr4 (Bit Score: 128; Significance: 3e-66; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 2541525 - 2541363
Alignment:
Q  63 actttcattgatatgaaagaaattcaacaaattagggttcccataagattacatca--ttcatctaagtctcaaccaatagagaaattagctagacatag 160  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |  ||||||||||||||||||||||||||||||||||| ||||||    
T  2541525 acttttattgatatgaaaggaattcaacaaattagagttcccataagattacattagattcatctaagtctcaaccaatagagaaattagctaaacatag 2541426  T
Q  161 aaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctc 223  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2541425 aaatacaaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctc 2541363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 224
Target Start/End: Original strand, 7395279 - 7395359
Alignment:
Q  144 aaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 224  Q
    |||||| ||||||||||| ||| |||||||||||||| ||||||||||||||||  ||| |||||||||||||| ||||||    
T  7395279 aaattaactagacatagagatacaaataaatagcatgaaaaataaaattaaccacaaaaacatgttgttcctcaattctct 7395359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 22093481 - 22093556
Alignment:
Q  147 ttagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 222  Q
    ||||||| ||||||| ||| ||||||||| | |||||||||||||||||||||  | ||| |||||||||| ||||    
T  22093481 ttagctacacatagagatacaaataaatatcttggaaaataaaattaaccatgtcatcatcttgttcctcaattct 22093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 2543417 - 2543372
Alignment:
Q  19 atgataatgttcgattcttcag-aaaataaactaatgactatccaa 63  Q
    |||||||||||||||||||||| |||||||||||||||||| ||||    
T  2543417 atgataatgttcgattcttcagaaaaataaactaatgactacccaa 2543372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 647831 - 647864
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  647831 ttcaacaaattagggttcccataggattacatca 647864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 143 - 224
Target Start/End: Original strand, 26809172 - 26809253
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 224  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||    
T  26809172 gaaattagctagacatagagatacaaataaatagcatggaaaataaaattaaccatgaaaacaggttgttcctcaattctct 26809253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 137
Target Start/End: Complemental strand, 9765422 - 9765361
Alignment:
Q  78 aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    |||||| |||||||||||||||||| |||| |||||||||  ||||||||||||||||||||    
T  9765422 aaagaagttcaacaaattagggttctcataggattacatcatattcatctaagtctcaacca 9765361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 23313806 - 23313883
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||  |||| | || |||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  23313806 actttcattgatattcaaaggagtttaacaaattagagttcccataagattacatcggattcatctaagtctcaacca 23313883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 135
Target Start/End: Original strand, 3862500 - 3862575
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacat--cattcatctaagtctcaac 135  Q
    ||||||||||||||  |||| | |||||||||||||||||| |||||||||||||   ||||| ||||||||||||    
T  3862500 actttcattgatatttaaaggagttcaacaaattagggttctcataagattacattagattcaactaagtctcaac 3862575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 36843565 - 36843615
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctca 133  Q
    ||||||||||||| ||||||| |||||||||||  ||||||||||||||||    
T  36843565 ttcaacaaattagagttcccacaagattacatcaaattcatctaagtctca 36843615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 6966765 - 6966732
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  6966765 ttcaacaaattagggttcccataggattacatca 6966732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 118
Target Start/End: Complemental strand, 11279134 - 11279077
Alignment:
Q  62 aactttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||| | ||||||||    
T  11279134 aactttcattgatattcaaaggagttcaacaaattagggttcccatagggttacatca 11279077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 17863722 - 17863755
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  17863722 ttcaacaaattagggttcccataggattacatca 17863755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 17866981 - 17867014
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  17866981 ttcaacaaattagggttcccataggattacatca 17867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 23760236 - 23760269
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  23760236 ttcaacaaattagggttcccataggattacatca 23760269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 62 - 118
Target Start/End: Original strand, 46846913 - 46846970
Alignment:
Q  62 aactttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    |||||||||||||||  |||| | ||||||||||||||||||||||| | ||||||||    
T  46846913 aactttcattgatattcaaaggagttcaacaaattagggttcccatagggttacatca 46846970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 294505 - 294449
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||  |||| | ||||||||| ||||||||||||| ||||||||||    
T  294505 actttcattgatattcaaaggagttcaacaaactagggttcccataggattacatca 294449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 3e-26; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 215
Target Start/End: Original strand, 20189867 - 20189939
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 215  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  20189867 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 20189939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 143 - 215
Target Start/End: Complemental strand, 22146124 - 22146052
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 215  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  22146124 gaaattagctagacatagagatacacataaatagcatggaaaataaaattaaccatgaaaccatgttgttcct 22146052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 224
Target Start/End: Complemental strand, 16731057 - 16730976
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttctct 224  Q
    ||||||||||||||||||| ||| |||||||||||||| ||| ||||||||||||||||| |||||||||||||| ||||||    
T  16731057 gaaattagctagacatagagatacaaataaatagcatgaaaactaaaattaaccatgaaaacatgttgttcctcaattctct 16730976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 15537901 - 15537847
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||||||    
T  15537901 ttcaacaaattagggttcccatatgattacatcaaattcatctcagtctcaacca 15537847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 19665292 - 19665346
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||||||||||| |||||||||  |||||||| |||||||||||    
T  19665292 ttcaacaaattagggttcccataggattacatcagattcatctcagtctcaacca 19665346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 32704858 - 32704914
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||  |||| | ||||||||||||||||||||||| ||||||||||    
T  32704858 actttcattgatattcaaaggagttcaacaaattagggttcccataggattacatca 32704914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 1838091 - 1838037
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||| ||||||||||||||||| |||||||||  |||||||| |||||||||||    
T  1838091 ttcaataaattagggttcccataggattacatcagattcatctcagtctcaacca 1838037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 15534706 - 15534652
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||||||||||| |||||||||  |||||||| | |||||||||    
T  15534706 ttcaacaaattagggttcccataggattacatcagattcatctcaatctcaacca 15534652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 20527767 - 20527845
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaaccaa 138  Q
    ||||||||||||||  |||| | ||||||| |||| ||||||||||| ||||||||  ||||||||| |||||||||||    
T  20527767 actttcattgatattcaaaggagttcaacacattaaggttcccataaaattacatcagattcatctaggtctcaaccaa 20527845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 13017817 - 13017850
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  13017817 ttcaacaaattagggttcccataggattacatca 13017850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 14790236 - 14790203
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  14790236 ttcaacaaattagggttcccataggattacatca 14790203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 14795264 - 14795231
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  14795264 ttcaacaaattagggttcccataggattacatca 14795231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 16883317 - 16883241
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaacc 136  Q
    ||||||||||||||  |||| | |||||||||||||||||| ||||| ||||||||  |||||| ||||||| ||||    
T  16883317 actttcattgatattcaaaggagttcaacaaattagggttctcataaaattacatcagattcatttaagtcttaacc 16883241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 143 - 212
Target Start/End: Complemental strand, 11059479 - 11059410
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgtt 212  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  11059479 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgtt 11059410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 13517987 - 13517919
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 211  Q
    ||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  13517987 gaaattagctagacatagagatacaaataaatagcatgggaaataaaattaaccatgaaaccatgttgt 13517919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 32576313 - 32576367
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||    
T  32576313 ttcaacaaattagggttcctataggattacatcatattcatctaagtctcaacca 32576367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 119
Target Start/End: Complemental strand, 40017595 - 40017561
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatcat 119  Q
    ||||||||||||||||||||||| |||||||||||    
T  40017595 ttcaacaaattagggttcccataggattacatcat 40017561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 31528007 - 31527974
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  31528007 ttcaacaaattagggttcccataggattacatca 31527974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 28562795 - 28562863
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 211  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  28562795 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28562863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 28566363 - 28566431
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 211  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  28566363 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 28566431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 222
Target Start/End: Complemental strand, 42062627 - 42062548
Alignment:
Q  140 agagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 222  Q
    |||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  42062627 agagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 42062548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 11989422 - 11989478
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||  |||| | |||||||||||||||||||||||| |||||||||    
T  11989422 actttcattgatattcaaaggagttcaacaaattagggttcccataaaattacatca 11989478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 34405466 - 34405433
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  34405466 ttcaacaaattagggttcccataggattacatca 34405433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 143 - 211
Target Start/End: Complemental strand, 2783804 - 2783736
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgt 211  Q
    ||||||||||||||||||| ||| |||| |||||||||| |||||||||||||||||||||||||||||    
T  2783804 gaaattagctagacatagagatacaaattaatagcatgggaaataaaattaaccatgaaaccatgttgt 2783736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 35412303 - 35412227
Alignment:
Q  143 gaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 222  Q
    ||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  |||||||||||||||| ||||    
T  35412303 gaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accatgttgttcctcaattct 35412227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 18645108 - 18645187
Alignment:
Q  140 agagaaattagctagacatagaaatataaataaatagcatggaaaataaaattaaccatgaaaccatgttgttcctcatttct 222  Q
    |||||||||||||||||||||| ||| ||||||| ||| | |||||||||||||||||||  ||| |||||||||||| ||||    
T  18645108 agagaaattagctagacatagagatacaaataaagagcgt-gaaaataaaattaaccatg--accgtgttgttcctcaattct 18645187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 13979108 - 13979054
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    |||||||||||||||||||||||||||||| ||  |||| ||||||||| |||||    
T  13979108 ttcaacaaattagggttcccataagattacctcagattcgtctaagtcttaacca 13979054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 11139196 - 11139229
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  11139196 ttcaacaaattagggttcccataggattacatca 11139229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 22626940 - 22626973
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  22626940 ttcaacaaattagggttcccataggattacatca 22626973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 6414 - 6491
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||  |||| | |||||||||||| ||||||||||||||||||||  |||||||||| |||||||||    
T  6414 actttcattgatattcaaaggagttcaacaaattaaggttcccataagattacatcagattcatctaaatctcaacca 6491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 63 - 137
Target Start/End: Original strand, 12575904 - 12575981
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||  |||| | ||||||||||||||||||| ||| |||||||||  ||||||||||||||||||||    
T  12575904 actttcattgatattcaaaggagttcaacaaattagggttcctataggattacatcagattcatctaagtctcaacca 12575981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 63 - 137
Target Start/End: Complemental strand, 13096671 - 13096594
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca--ttcatctaagtctcaacca 137  Q
    ||||||||||||||  |||| | ||||| |||| |||||||||||| ||||||||||  |||||||||||||||||||    
T  13096671 actttcattgatattcaaaggagttcaataaatcagggttcccataggattacatcaggttcatctaagtctcaacca 13096594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Complemental strand, 1936245 - 1936191
Alignment:
Q  85 ttcaacaaattagggttcccataagattacat--cattcatctaagtctcaacca 137  Q
    |||||||||||| |||||||||||||||||||   ||||||||||||||||||||    
T  1936245 ttcaacaaattatggttcccataagattacatgagattcatctaagtctcaacca 1936191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 16190804 - 16190858
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatc--attcatctaagtctcaacca 137  Q
    ||||||||||||||||||| |||||||||||||  ||||||||||| ||||||||    
T  16190804 ttcaacaaattagggttcctataagattacatcagattcatctaagactcaacca 16190858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 13492903 - 13492847
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||  |||| | ||||||||| ||||||||||||||||||||||||    
T  13492903 actttcattgatattcaaaggagttcaacaaactagggttcccataagattacatca 13492847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 34065983 - 34065908
Alignment:
Q  65 tttcattgatatgaaagaaa-ttcaacaaattagggttcccataagattacatca--ttcatctaagtctcaacca 137  Q
    ||||||||||||  || ||| |||||||||||||| |||||||||||||||||||  |||||| |||||| |||||    
T  34065983 tttcattgatattcaaaaaagttcaacaaattaggattcccataagattacatcaagttcatcaaagtcttaacca 34065908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Complemental strand, 10759739 - 10759706
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  10759739 ttcaacaaattagggttcccataggattacatca 10759706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 13495628 - 13495571
Alignment:
Q  63 actttcattgatatg-aaagaaattcaacaaattagggttcccataagattacatcat 119  Q
    ||||||||||||||  |||| | ||||||||| ||||||||||||| |||||||||||    
T  13495628 actttcattgatattcaaaggagttcaacaaactagggttcccataggattacatcat 13495571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 272 - 305
Alignment:
Q  85 ttcaacaaattagggttcccataagattacatca 118  Q
    ||||||||||||||||||||||| ||||||||||    
T  272 ttcaacaaattagggttcccataggattacatca 305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University